Part of scaffold_1565 (Scaffold)

For more information consult the page for scaffold_1565 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SSRP1 ENSTTRG00000002076 (Bottlenosed dolphin)

Gene Details

structure specific recognition protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001951, Bottlenosed dolphin)

Protein Percentage 81.36%
cDNA percentage 80.08%
Ka/Ks Ratio 0.0369 (Ka = 0.0037, Ks = 0.1006)

SSRP1 ENSBTAG00000000375 (Cow)

Gene Details

FACT complex subunit SSRP1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000486, Cow)

Protein Percentage 99.15%
cDNA percentage 92.38%
Ka/Ks Ratio 0.00649 (Ka = 0.0035, Ks = 0.5421)

SSRP1  (Minke Whale)

Gene Details

structure specific recognition protein 1

External Links

Gene match (Identifier: BACU017235, Minke Whale)

Protein Percentage 99.72%
cDNA percentage 99.25%
Ka/Ks Ratio 0.04553 (Ka = 0.0012, Ks = 0.0267)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2136 bp    Location:58188..49508   Strand:-
>bmy_17535
ATGGCAGAAACRCTGGAGTTCAACGACGTGTATCAGGAGGTGAAAGGCTCCATGAATGATGGTCGGCTGAGGTTGAGCCGCCAGGGCATCATCTTCAAGAATAGTAAGACCGGCAAAGTGGACAACATCCAGGCTGGGGAGGTGACGGAAGGTATCTGGCGCCGAGTAGCTCTGGGCTACGGACTTAAACTGCTCACGAAGAACGGACATGTCTACAAGTACGACGGCTTCCGGGAGTCGGAGTTTGAGAAACTCTCTGATTTYTTCAAAACTCACTATCGCCTGGAGCTCATGGAGAAGGACCTCTGTGTGAAGGGTTGGAACTGGGGAACAGTGAAGTTTGGTGGGCAGCTACTTTCCTTCGACATTGGCGACCAGCCGGTCTTCGAGATACCTCTCAGCAACGTGTCCCAGTGCACCACAGGCAAGAATGAGGTGACACTGGAATTCCACCAGAATGACGATGCAGAGGTCTCTCTCATGGAGGTGCGCTTCTATGTGCCTCCCACCCAGGAGGATGGCGTGGACCCCGTTGAGGCCTTTGCCCAGAATGTGCTGTCGAAGGCGGATGTGATCCAGGCCACCGGAGACGCCATCTGCATCTTCCGGGAGCTGCAGTGTCTGACTCCCCGAGGCCGTTACGACATTCGTATCTACCCCACCTTTCTGCACCTGCACGGCAAGACCTTTGACTACAAGATCCCCTACACCACAGTGCTGCGTCTCTTTCTGCTGCCCCACAAGGACCAGCGCCAGATGTTTTTTGTGATCAGCCTGGATCCCCCCATCAAGCAGGGCCAGACCCGCTACCACTTCCTGATCCTCCTCTTCTCGAAGGACGAGGACATCTCCTTGACTCTCAACATGAATGAGGAAGAGGTGGAGAAGCGCTTTGAGGGGCGGCTCACCAAGAACATGTCGGGATCCCTCTATGAGATGGTCAGCCGGGTCATGAAAGCACTGGTGAACCGCAAGATCACCGTCCCAGGCAACTTCCAAGGGCACTCGGGGGCCCAGTGCATCACCTGCTCCTACAAGGCCAGCTCGGGACTGCTGTACCCACTGGAGCGGGGCTTCATCTACGTCCACAAGCCACCCGTGCACATCCGCTTCGATGAGATCTCCTTCGTCAACTTTGCCCGCGGTACCACCACCACGCGTTCCTTTGACTTTGAAATTGAGACCAAGCAGGGCACTCAGTATACCTTCAGTAGCATTGAGAGGGAGGAGTATGGAAAGCTGTTTGATTTTGTCAACGCAAAAAAACTCAACATCAAAAACCGAGGATTGAAAGAGGGCATGAACCCCAGCTATGATGAATACGCCGACTCCGACGAAGACCAGCACGATGCCTACTTGGAACGGATGAAGGAGGAGGGCAAGATCCGGGAGGAGAATGCCAATGACAGCAGTGATGACTCAGGAGAAGAAACCGATGAGTCATTCAACCCAGGTGAAGAGGAGGAAGATGTGGCAGAGGAGTTTGACAGCAATGCCTCTGCCAGCTCGTCCAGTAACGAGGGTGACAGTGACCGGGAAGAGAAGAAACGGAAGCAGCTGAAAAAGGCCAAGATGGCCAAGGATCGCAAGAGTCGCAAGAAGCCCGTGGAGGTAAAGAAAGGCAAAGACCCTAACGCCCCCAAAAGGCCCATGTCTGCCTACATGCTGTGGCTCAACGCCAGCCGAGAGAAGATCAAGTCAGACCATCCTGGCATCAGTATCACGGATCTTTCCAAGAAGGCAGGCGAGATCTGGAAGGGAATGTCCAAAGAGAAGAAAGAGAGACAGGAGTGGGATCGCAAGGCTGAGGATGCCAGGAGGGAATATGAAAAAGCCATGAAAGAGTATGAAGGGGGCCGGGGTGAGTCTTCTAAAAGGGATAAGTCAAAGAAGAAGAAGAAAGTAAAGGTCAAGATGGAGAAGAAATCAACACCCTCTAGGGGCTCATCATCCAAGTCTTCATCCAGGCAGCTGAGTGAGAGCTTCAAGAGCAAAGAGTTTGTGTCCAGCGATGAGAGCTCTTCGGGAGAGAATAAGAGCAAAAAGAAGAGAAGGCGGAGTGAGGACTCTGAAGAAGAGGAACTAGCCAGTACTCCCCCCAGCTCCGAAGACTCGGCGTCAGGATCTGATGAGTAG

Related Sequences

bmy_17535T0 Protein

Length: 712 aa      View alignments
>bmy_17535T0
MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGEVTEGIWRRVALGYGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKERQEWDRKAEDARREYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE*