Sequence detailsbmy_17593 (Coding sequence)

Part of scaffold_1535 (SequenceType object (1))

For more information consult the page for scaffold_1535 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

EPCAMENSTTRG00000004235 (Bottlenosed dolphin)

Gene Details

epithelial cell adhesion molecule

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003983, Bottlenosed dolphin)

Protein Percentage 95.49%
cDNA percentage 96.3%
Ka/Ks Ratio 0.45291 (Ka = 0.03, Ks = 0.0663)

EPCAMENSBTAG00000006474 (Cow)

Gene Details

epithelial cell adhesion molecule precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000008487, Cow)

Protein Percentage 93.79%
cDNA percentage 93.79%
Ka/Ks Ratio 0.25087 (Ka = 0.0372, Ks = 0.1482)

EPCAM (Minke Whale)

Gene Details

epithelial cell adhesion molecule

External Links

Gene match (Identifier: BACU013888, Minke Whale)

Protein Percentage 98.37%
cDNA percentage 98.69%
Ka/Ks Ratio 0.36579 (Ka = 0.0091, Ks = 0.0249)

Additional orthologs identified in other species via the OPTIC pipeline.

EPCAM (Human)   Epcam (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1122 bp    Location:356866..367634   Strand:+
Raw sequence 
>bmy_17593
AAGCGCGCAGTCCGTCGGCCAGCTCGCACCGTGCTTTCGGCCCCGGGGCACCTAGCTGTCGTCCTCCCGACGCGCGCGTCCCAGGCCTCGTGCCGTGCCGCCGGCCAGTGGGCTCCCGGCGGCCTACTCTGTCCGCGCGTCCTCCCGCGAGCCCCCGGCCCGCTTCGAGCCCCTCGCGCCCTTGTCCTCGGCGCGCGCAGCATGGCGCCCCCCCACGTCCTTGCGTTCGGGCTCCTGCTCGCCGCAGCGACGGCGGCGGTGGCCGCGGCCCAGGAAGGATGTGTGTGTGAAAACTACAAACTGACCACAAACTGCTCTGTGAATGCGCATGGTCAGTGCCAGTGTACTTCAATCGGTACACAACATTCCGTCATTTGCACAAAACTGGCTGCCAAATGTTTGGTGATGAAGGCAGAAATGAGTGGGTCAAAGGCTGGGAGAAGAGTGAAACCAGAGGGTGCTATCCAGAATAATGACGGGCTCTATGATCCCGAGTGTGACGACAAGGGGCTCTTTAAAGCCAAGCAGTGCAATGGCACCTCCACGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAGAACCGATAAGGACAGTGAAATATCCTGCTCCGAGCTAGTGAGGACCTTCTGGATCATCATTGAACTAAAACACAAGACAAGAGAAAAACCTTATGATGTTCAAAGTTTACAGGCTCGTTATCAACTGGATCCAAAATATATCACAAATATTCTGTATGAGAATGATGTTATCATTATTGACCTGGTACAAAATTCTTCTCAGAAAACTCAGAATGATGTGGACATAGCTGATGTGGCTTATTATTTTGAAAAAGATGTTAAAGATGAGTCCTTGTTCCAGTCCAAAAGGATGGACCTGAGAGTAAATGGGGAACTACTGGATCTGGATCCTGGTCGAACTTCAATTTACTATGTTGATGAAAAACCACCTGAATTTTCAATGCAGGGTCTACAAGCTGGTATTATTGCTGTCATTGTGGTTGTGGCAGTAGCAATTATTGCTGGAATTGCTGTGCTGGTTGTTTCCAGAAAGAAAAGAATGGCAAAATATGAGAAAGCTGAGATAAAGGAGATGGGTGAAATGCATAGGGAACTCAATGCATAA

Related Sequences

bmy_17593T0 SequenceType object (3)

Length: 374 aa      View alignments
>bmy_17593T0
KRAVRRPARTVLSAPGHLAVVLPTRASQASCRAAGQWAPGGLLCPRVLPRAPGPLRAPRALVLGARSMAPPHVLAFGLLLAAATAAVAAAQEGCVCENYKLTTNCSVNAHGQCQCTSIGTQHSVICTKLAAKCLVMKAEMSGSKAGRRVKPEGAIQNNDGLYDPECDDKGLFKAKQCNGTSTCWCVNTAGVRRTDKDSEISCSELVRTFWIIIELKHKTREKPYDVQSLQARYQLDPKYITNILYENDVIIIDLVQNSSQKTQNDVDIADVAYYFEKDVKDESLFQSKRMDLRVNGELLDLDPGRTSIYYVDEKPPEFSMQGLQAGIIAVIVVVAVAIIAGIAVLVVSRKKRMAKYEKAEIKEMGEMHRELNA*