Part of scaffold_1535 (Scaffold)

For more information consult the page for scaffold_1535 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MSH2 ENSTTRG00000004250 (Bottlenosed dolphin)

Gene Details

mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004001, Bottlenosed dolphin)

Protein Percentage 91.7%
cDNA percentage 94.2%
Ka/Ks Ratio 0.61361 (Ka = 0.054, Ks = 0.0879)

MSH2 ENSBTAG00000002742 (Cow)

Gene Details

DNA mismatch repair protein Msh2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003556, Cow)

Protein Percentage 90.54%
cDNA percentage 90.81%
Ka/Ks Ratio 0.2408 (Ka = 0.0607, Ks = 0.2519)

MSH2  (Minke Whale)

Gene Details

mutS homolog 2

External Links

Gene match (Identifier: BACU013887, Minke Whale)

Protein Percentage 93.96%
cDNA percentage 95.71%
Ka/Ks Ratio 0.81425 (Ka = 0.0423, Ks = 0.052)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1524 bp    Location:435074..450995   Strand:+
>bmy_17594
ATGGAAGGGCACCCCTCAACTTTCTACTCTCCAGCTTTCTGTATTGTGATTTTATTTCCTTATTGTGGTGTTCAATTTTGGTATGTGAAGAAGGTGGAAAACCATGAATTCCTTGTAAAACCTTCATTTGATCCTAACTTGAGTGAATTAAGAGAAATAATGGATGACTTAGAAAAGAAGATGCAGTCAACATTAATAAGCTTGGATCCTGGCAAACAGATTAAACTGGATTCCAGCACACAATTTGGATATTATTTTCGCGTAACATGCAAGGAAGAAAAAGTCCTTCGTAATAATAAAAATTTCAGTACAGTAGATATCCAGAAGAATGGTGTTAAATTTACCAACAGTAAATTGACTTCTCTCAATGAAGAGTATACCAAAAATAAAACYGAATATGAGGACGCCCAGGATGCCATTGTTAAAGAAATTGTCAATATTTCTTCAGGCTATGTAGAACCGATGCAGACACTCAATGATGTGTTAGCTCAGCTAGATGCTGTTGTAAGCTTTGCTCATGTGTCCAATGGAGCACCTGTTCCATATGTACGGCCGGTCATTTTGGAGAAAGGACAAGGGAGAATTATACTGAAAGCATCCAGACATGCTTGTGTTGAAGTTCAAGATGAAGTTGCATTTATTCCTAATGATGTTCACTTTGAAAAAGATAAACAGATGTTCCACATCATTACTGGTCCCAACATGGGAGGTAAATCAACATATATTCGCCAGACTGGGGTGGTAGTTCTCATGGCCCAAATTGGGTGTTTTGTGCCATGTGAGTCAGCAGAAGTGTCCATGGTGGACTGCATCTTGGCCCGGGTAGGGGCTGGTGACAGTCAGTTGAAAGGAGTCTCCACATTCATGGCTGAAATGTTAGAAACTGCTTCTATTCTCAGGTCTGCAACCAAAGATTCTTTAATAATCATAGATGAATTGGGAAGAGGAACCTCTACCTATGACGGATTTGGGTTAGCGTGGGCTATATCAGAGTACATTGCAACAAGGATCCGTGCTTTTTGCATGTTTGCAACCCATTTTCATGAACTTACTGCCTTGGCCAATCAGATACCAACTGTTAATAATCTACATGTCACAGCACTAACTACTGAAGAGACCTTAACTATGCTTTATCAGGTGAAGAAAGGTGTCTGTGATCAGAGTTTTGGGATTCACGTTGCCGAGCTTGCTAATTTCCCCAGGCATGTAATAGAGTGTGCTAAACAAAAAGCCCTGGAACTAGAGGAGTTTCAGAATATTGGGAAACCACAGGAACATGATGAAATGGAACCAGCAGCAAAGAGGTGCTATCTGGAAAGAGAGCAAGGTGAAAAAATTATTGAAGAGTTTTTATCCAAGGTGAAGCAAGTGCCCTTTACTGAAATGTCAGAAGAAAACATCGTAATGAAGTTAAAACAGCTGAAAGCTGAGGTGATAGCAAAGAATAATCGTTTTGTAAATGAAATAATTTCAAGAATAAAGACTTTTACACATATTCCCGAATGGTATGGAAGAAACGAGTAG

Related Sequences

bmy_17594T0 Protein

Length: 508 aa      View alignments
>bmy_17594T0
MEGHPSTFYSPAFCIVILFPYCGVQFWYVKKVENHEFLVKPSFDPNLSELREIMDDLEKKMQSTLISLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEDAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIILKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSMVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATRIRAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNIGKPQEHDEMEPAAKRCYLEREQGEKIIEEFLSKVKQVPFTEMSEENIVMKLKQLKAEVIAKNNRFVNEIISRIKTFTHIPEWYGRNE*