Part of scaffold_1535 (SequenceType object (1))

For more information consult the page for scaffold_1535 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MSH2ENSTTRG00000004250 (Bottlenosed dolphin)

Gene Details

mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004001, Bottlenosed dolphin)

Protein Percentage 91.7%
cDNA percentage 94.2%
Ka/Ks Ratio 0.61361 (Ka = 0.054, Ks = 0.0879)

MSH2ENSBTAG00000002742 (Cow)

Gene Details

DNA mismatch repair protein Msh2

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000003556, Cow)

Protein Percentage 90.54%
cDNA percentage 90.81%
Ka/Ks Ratio 0.2408 (Ka = 0.0607, Ks = 0.2519)

MSH2 (Minke Whale)

Gene Details

mutS homolog 2

External Links

Gene match (Identifier: BACU013887, Minke Whale)

Protein Percentage 93.96%
cDNA percentage 95.71%
Ka/Ks Ratio 0.81425 (Ka = 0.0423, Ks = 0.052)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence SequenceType object (2)

Length: 1524 bp    Location:435074..450995   Strand:+
>bmy_17594
ATGGAAGGGCACCCCTCAACTTTCTACTCTCCAGCTTTCTGTATTGTGATTTTATTTCCTTATTGTGGTGTTCAATTTTGGTATGTGAAGAAGGTGGAAAACCATGAATTCCTTGTAAAACCTTCATTTGATCCTAACTTGAGTGAATTAAGAGAAATAATGGATGACTTAGAAAAGAAGATGCAGTCAACATTAATAAGCTTGGATCCTGGCAAACAGATTAAACTGGATTCCAGCACACAATTTGGATATTATTTTCGCGTAACATGCAAGGAAGAAAAAGTCCTTCGTAATAATAAAAATTTCAGTACAGTAGATATCCAGAAGAATGGTGTTAAATTTACCAACAGTAAATTGACTTCTCTCAATGAAGAGTATACCAAAAATAAAACYGAATATGAGGACGCCCAGGATGCCATTGTTAAAGAAATTGTCAATATTTCTTCAGGCTATGTAGAACCGATGCAGACACTCAATGATGTGTTAGCTCAGCTAGATGCTGTTGTAAGCTTTGCTCATGTGTCCAATGGAGCACCTGTTCCATATGTACGGCCGGTCATTTTGGAGAAAGGACAAGGGAGAATTATACTGAAAGCATCCAGACATGCTTGTGTTGAAGTTCAAGATGAAGTTGCATTTATTCCTAATGATGTTCACTTTGAAAAAGATAAACAGATGTTCCACATCATTACTGGTCCCAACATGGGAGGTAAATCAACATATATTCGCCAGACTGGGGTGGTAGTTCTCATGGCCCAAATTGGGTGTTTTGTGCCATGTGAGTCAGCAGAAGTGTCCATGGTGGACTGCATCTTGGCCCGGGTAGGGGCTGGTGACAGTCAGTTGAAAGGAGTCTCCACATTCATGGCTGAAATGTTAGAAACTGCTTCTATTCTCAGGTCTGCAACCAAAGATTCTTTAATAATCATAGATGAATTGGGAAGAGGAACCTCTACCTATGACGGATTTGGGTTAGCGTGGGCTATATCAGAGTACATTGCAACAAGGATCCGTGCTTTTTGCATGTTTGCAACCCATTTTCATGAACTTACTGCCTTGGCCAATCAGATACCAACTGTTAATAATCTACATGTCACAGCACTAACTACTGAAGAGACCTTAACTATGCTTTATCAGGTGAAGAAAGGTGTCTGTGATCAGAGTTTTGGGATTCACGTTGCCGAGCTTGCTAATTTCCCCAGGCATGTAATAGAGTGTGCTAAACAAAAAGCCCTGGAACTAGAGGAGTTTCAGAATATTGGGAAACCACAGGAACATGATGAAATGGAACCAGCAGCAAAGAGGTGCTATCTGGAAAGAGAGCAAGGTGAAAAAATTATTGAAGAGTTTTTATCCAAGGTGAAGCAAGTGCCCTTTACTGAAATGTCAGAAGAAAACATCGTAATGAAGTTAAAACAGCTGAAAGCTGAGGTGATAGCAAAGAATAATCGTTTTGTAAATGAAATAATTTCAAGAATAAAGACTTTTACACATATTCCCGAATGGTATGGAAGAAACGAGTAG

Related Sequences

bmy_17594T0 SequenceType object (3)

Length: 508 aa      View alignments
>bmy_17594T0
MEGHPSTFYSPAFCIVILFPYCGVQFWYVKKVENHEFLVKPSFDPNLSELREIMDDLEKKMQSTLISLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEDAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIILKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSMVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATRIRAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQNIGKPQEHDEMEPAAKRCYLEREQGEKIIEEFLSKVKQVPFTEMSEENIVMKLKQLKAEVIAKNNRFVNEIISRIKTFTHIPEWYGRNE*