Part of scaffold_1538 (Scaffold)

For more information consult the page for scaffold_1538 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

UBP1 ENSTTRG00000016791 (Bottlenosed dolphin)

Gene Details

upstream binding protein 1 (LBP-1a)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015919, Bottlenosed dolphin)

Protein Percentage 94.16%
cDNA percentage 95.21%
Ka/Ks Ratio 0.63 (Ka = 0.044, Ks = 0.0698)

UBP1 ENSBTAG00000003968 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005181, Cow)

Protein Percentage 91.67%
cDNA percentage 90.84%
Ka/Ks Ratio 0.22443 (Ka = 0.055, Ks = 0.2451)

UBP1  (Minke Whale)

Gene Details

upstream binding protein 1 (LBP-1a)

External Links

Gene match (Identifier: BACU014641, Minke Whale)

Protein Percentage 91.96%
cDNA percentage 93.57%
Ka/Ks Ratio 0.51644 (Ka = 0.056, Ks = 0.1085)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1338 bp    Location:289312..310987   Strand:+
>bmy_17629
ATGTTCTTTGTATGGATTGTTTTTGATATACAATTTTTAATAATAGGTCAGTCTTATGAAATTCGCATGCTGGATAATCGGAAAATGGGAGATGTGCCTGAGATCACTGGAAAACTGGTAAAGAGCATCATAAGAGTTGTATTCCATGACAGACGGCTCCAGTATACAGAGCATCAGCAGCTTGAAGGTTGGAAGTGGAATCGCCCAGGAGACAGACTCCTCGATTTAGATATTCCAATGTCTGTGGGAATAATTGACACAAAGACAAATCCAAGCCAGTTAAATGCAGTTGAATTTCTGTGGGATCCTGCAAAACGCACATCTGCTTTCATTCAGGTACACTGCATCAGCACAGAATTTACTCCCCGGAAGCACGGAGGTGAAAAGGGAGTGCCTTTTAGGATCCAGGTTGACACCTTTAAGCAGAATGAAAATGGAGAATACACAGATCATCTACACTCAGCTAGCTGCCAAATCAAAGTTTTTAAGCCGAAAGGTGCAGATAGGAAACAAAAAACTGATCGAGAGAAGATGGAGAAGAGAACCGCTCATGAGAAGGAGAAGTACCAGCCGTCCTATGACACCACGGTCCTCACAGAGATGAGGCTTGAGCCTATAATTGAAGATGCAGTTGAACATGAGCAGAAAAAGTCCAGCAAGCGGACTTTGCCAGCAGACTACGGTGATTCTCTGGCAAAGCGAGGCAGTTGCTCTCCATGGCCCGACACCCCCACCGCCTATGTGAACAGCAGCCCTTCCACGGCGCCCACCTTCACGGCCCCGCAGCAGAGCGCTTGCAGCGTCCCGGACAGCAATTCTTCTTCCCCAAATCATCAAGGAGATGGAGTTTCACAGGCCTCTAGTGAACAACTTCAGCCTTCAGCCACGATCCAGGAAACACAACAATGGCTGATCAAAAACAGATTCTCTTCCTACACAAGACTGTTCTCCAGTTTTTTAGGTGCCGACTTGTTAAAACTGACAAAGGAGGATCTAGTACAAATTTGTGGTGCAGCCGATGGAATTCGGCTCTATAATTCACTGAAGTCAAGGTCGGTGCGGCCCCGCCTGACCCTCTACGTCTGCCGCGAGCAGCCGGCGCCGCAGGGGCAGCAGCAGGCAGCGGGTGGCGGGGGCGACGGCGGCGGCGCCACGCCCTACGTTTATCATGCAATCTACTTAGAAGAAATGGTTGCTTCAGAAGTTGCTCGAAAACTTGCGTTGGTGTTTAATATTCCTTTCCACCAAATTAACCAGGTTTACAGACAGGGTCCCACCGGTATTCACATTCTTGTTAGCGATCAGGTAACTGGCATGCCCTTTCCCCTTTCACACTGA

Related Sequences

bmy_17629T0 Protein

Length: 446 aa      View alignments
>bmy_17629T0
MFFVWIVFDIQFLIIGQSYEIRMLDNRKMGDVPEITGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTKTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAHEKEKYQPSYDTTVLTEMRLEPIIEDAVEHEQKKSSKRTLPADYGDSLAKRGSCSPWPDTPTAYVNSSPSTAPTFTAPQQSACSVPDSNSSSPNHQGDGVSQASSEQLQPSATIQETQQWLIKNRFSSYTRLFSSFLGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTLYVCREQPAPQGQQQAAGGGGDGGGATPYVYHAIYLEEMVASEVARKLALVFNIPFHQINQVYRQGPTGIHILVSDQVTGMPFPLSH*