Part of scaffold_1561 (Scaffold)

For more information consult the page for scaffold_1561 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SHROOM1 ENSTTRG00000014724 (Bottlenosed dolphin)

Gene Details

shroom family member 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013962, Bottlenosed dolphin)

Protein Percentage 95.28%
cDNA percentage 97.51%
Ka/Ks Ratio 0.91317 (Ka = 0.024, Ks = 0.0262)

SHROOM1 ENSBTAG00000014676 (Cow)

Gene Details

protein Shroom1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000035318, Cow)

Protein Percentage 81.25%
cDNA percentage 88.21%
Ka/Ks Ratio 0.60702 (Ka = 0.111, Ks = 0.1829)

SHROOM1  (Minke Whale)

Gene Details

shroom family member 1

External Links

Gene match (Identifier: BACU013071, Minke Whale)

Protein Percentage 78.54%
cDNA percentage 81.28%
Ka/Ks Ratio 0.98232 (Ka = 0.0809, Ks = 0.0823)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1992 bp    Location:228399..223536   Strand:-
>bmy_17662
CCGGCGCGCCCCGGGGCTCCCGCGCCGGGAACCGCCGGCAGGGGACGCCTCGCCAACCAGCAGCGGAAGTGGTGCTTCTCAGAGCCGGGAAAGCTGGATCGCATGGGTCGGGGCGGTGGGTTGGCGGGGGAATGCTCGGGGGAGGCCTGCCCCAGCTCTGGCCTCGCCAGGCCGGAGACCCGGGAATGGCAGCAGCGGACGCTGGCAGAGTTCGAAGGTCACCAGATCAGATGGCTGCCTGCGACCCAGCCCCGAAGCATAGAGGACCCGAAACCCCGGGCCTTGAGGCTCAGCAATGCCTATAGGCCTAACGGTCGGAGTCGGAGCGCTTCGGGGGAAGTCTTGTCCCCCTGGGGAAGTCCAGGAGGGGTCATGCCCATTGCCCAGGCTGTTCCCCAAGGAGCAGAAACCCCCAGACCATTGTTTCAGACCAAACTTTCCAGGTTCCTGACTCAGAAGGAAGTTGCAGTGGTGTGTTCTGCAGAGGGCCTCCAGAGCAGTCCCTCTGACYGTGAGCAGAGGGCCTCAGAGAACTGCATTGTGTCTGCCCGGCTCCCATCCCTTCCTGATGATGAAGTTTTCCTGGAAGAAGCCCCGCTGGTCAGAATGAGATCACCTGCAGACTCCCATGCTCCCCTGGGGCTCCCAAACAGTGTCTCTTCCACTTCCAGTGTCCATGCCTCTGACCAGCAGTACGGAGCTGGCTTGGGTCAGAGGGCTGACCAGGCTATAATCCCCTCAGAGCAGCCCCTCCATGAGCACCCAGAGACTGCAGGGGCGGATGACTGTTGGCAGGGGGTAAACGGTTCTGTGAGTGTCTCCAGGCCTACATGCTGTAGTCCCCCTGGGACTGCAAATGGTGACATCGCAACCTTTGACCCCACTGGACTGCTGACCACTGATCCCCCCACAGCTGCAGAGACTGACCCCCTCAAACCTCTCCCAGGTGATGCCCTGAGACCTCCAGGCAATGATACCCCGGGGCCTTCTGACCACACTGCCCAGGCTTGGGGCACTGGCCAGACTGGTTCCAGGTCAACATGGCCCAGTCCACGCCTCGAGGAGCTGGTTCAGGAGCTGGCCAGATTGGATCCCTCTCTGAGTGACACTCTCACCTCCTATCCCAGCCCAGAGCCATCCCTGGGCCTGCTGGATGGGCTGATTCCTTTAGCCGAGGTCTGGGCTGCAATGAGGCCAGCCTGTGGAGAGGCTGGAGAGGAAGCAGCTGGTACTTCTGAGTCAGGCTCTTACCTACTTAACTCCACCCAGCGCCTGCCAGCTTCTCAGGAGGAGACAAGGCCTGAAAACCTTACCACCCACGCTGTGCCTGACAAGCCATGCAGCCCGGGTCTCCCCGAGCCAAATTACAGCATCCAAGCCAAGAAAGTGGAGCTGGCGGACCTCCTCCAAAAGACGCTAAGGGAGCTTCAGGCCGAGCAGGAGCAGCTGCAAGGAAAGGCCCAGGCTTGGGCCAGGCGCGGGGCTGCCCTGGAGGCCGCGGTCGGCCAGGCCTGTGCACCCCACGAGCTCGAGCGGTTCAGCCGGTTCATGGCCGACCTAGAGCGCGTGCTTGGCCTCCTGCTGCTGCTGGGCAGTCGCCTGGACCGCGTGCACCGCGCCCTGGCCCGGGCGGGCGCAGACGGCGACCCTGACGAGCAGGCCTCTCTGCTGCAGCGACTGGGGCTCCTGCAGCGGCAGCAGGAAGACGCCAAGGAGTTGAAGCAGCATGTGGCGCGGCGCGAGCGGGCCCTGCGCGAGGTGCTAGCGCGCGCACTGCCCGCCGACGAGCTGCGCGCCTATCGCGCCTTGTGGGTCGGCAAGGCCGCTGTCCTGGCCCAGCAGCGCAGCCTGGACGAGCGGGTCCGCCTCCTTCAGGACCAACTGGACACAGTCAGGACCGACCTTGGCCGTCGTCCTCCGACTCCCAGGCCGGCCTGGCCCCCAGGGACCCGTCCTCCGGATAAACCGCCCTTCCCCCCTCCCCTCATCTAG

Related Sequences

bmy_17662T0 Protein

Length: 664 aa      View alignments
>bmy_17662T0
PARPGAPAPGTAGRGRLANQQRKWCFSEPGKLDRMGRGGGLAGECSGEACPSSGLARPETREWQQRTLAEFEGHQIRWLPATQPRSIEDPKPRALRLSNAYRPNGRSRSASGEVLSPWGSPGGVMPIAQAVPQGAETPRPLFQTKLSRFLTQKEVAVVCSAEGLQSSPSDXEQRASENCIVSARLPSLPDDEVFLEEAPLVRMRSPADSHAPLGLPNSVSSTSSVHASDQQYGAGLGQRADQAIIPSEQPLHEHPETAGADDCWQGVNGSVSVSRPTCCSPPGTANGDIATFDPTGLLTTDPPTAAETDPLKPLPGDALRPPGNDTPGPSDHTAQAWGTGQTGSRSTWPSPRLEELVQELARLDPSLSDTLTSYPSPEPSLGLLDGLIPLAEVWAAMRPACGEAGEEAAGTSESGSYLLNSTQRLPASQEETRPENLTTHAVPDKPCSPGLPEPNYSIQAKKVELADLLQKTLRELQAEQEQLQGKAQAWARRGAALEAAVGQACAPHELERFSRFMADLERVLGLLLLLGSRLDRVHRALARAGADGDPDEQASLLQRLGLLQRQQEDAKELKQHVARRERALREVLARALPADELRAYRALWVGKAAVLAQQRSLDERVRLLQDQLDTVRTDLGRRPPTPRPAWPPGTRPPDKPPFPPPLI*