Part of scaffold_1590 (Scaffold)

For more information consult the page for scaffold_1590 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

GDNF ENSTTRG00000002115 (Bottlenosed dolphin)

Gene Details

glial cell derived neurotrophic factor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001982, Bottlenosed dolphin)

Protein Percentage 98.74%
cDNA percentage 98.53%
Ka/Ks Ratio 0.11984 (Ka = 0.0055, Ks = 0.0462)

BT.58072 ENSBTAG00000005176 (Cow)

Gene Details

glial cell line-derived neurotrophic factor precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006816, Cow)

Protein Percentage 97.48%
cDNA percentage 93.71%
Ka/Ks Ratio 0.0353 (Ka = 0.0108, Ks = 0.3067)

GDNF  (Minke Whale)

Gene Details

glial cell derived neurotrophic factor

External Links

Gene match (Identifier: BACU015009, Minke Whale)

Protein Percentage 96.77%
cDNA percentage 97.13%
Ka/Ks Ratio 0.57877 (Ka = 0.0254, Ks = 0.0438)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 480 bp    Location:456593..457072   Strand:+
>bmy_17727
ATGCCAGAGGATTATCCTGATCAGTTTGATGATGTCATGGATTTTATACAAGCCACCATTAGAAGACTGAAAAGGTCACCAGAGAAACAAATGGCCGTGCTTCCTCGCAGAGAGCGGCACCGGCAGGCTGCAGCCGCCAGCCCGGAGAGTTCCCGAGGGAAAGGCCGGCGGGGCCAGAGGGGCCGAAATCGGGGGTGCGTCTTAACTGCCGTGCATCTGAATGTCACCGACTTGGGTTTGGGCTACGAAACCAAGGAGGAACTCATTTTCAGGTACTGCAGCGGCTCATGCGATGCAGCCGAGACAATGTATGACAAAATATTAAAAAACTTGTCCAAAAATAGAAGGCTGGTGAGTGACAAAGTCGGGCAGGCGTGTTGCAGACCCCTCGCCTTCGATGACGACCTGTCCTTTTTAGATGATAACCTGGTTTACCATATTCTGAGAAAGCATTCCGCTAAACGCTGTGGATGTATCTGA

Related Sequences

bmy_17727T0 Protein

Length: 160 aa      View alignments
>bmy_17727T0
MPEDYPDQFDDVMDFIQATIRRLKRSPEKQMAVLPRRERHRQAAAASPESSRGKGRRGQRGRNRGCVLTAVHLNVTDLGLGYETKEELIFRYCSGSCDAAETMYDKILKNLSKNRRLVSDKVGQACCRPLAFDDDLSFLDDNLVYHILRKHSAKRCGCI*