Part of scaffold_1605 (Scaffold)

For more information consult the page for scaffold_1605 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ENSTTRG00000008276 (Bottlenosed dolphin)

Gene Details

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007849, Bottlenosed dolphin)

Protein Percentage 98.23%
cDNA percentage 98.61%
Ka/Ks Ratio 0.22329 (Ka = 0.0081, Ks = 0.0364)

SMCHD1 ENSBTAG00000003354 (Cow)

Gene Details

structural maintenance of chromosomes flexible hinge domain-containing protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003904, Cow)

Protein Percentage 94.8%
cDNA percentage 94.31%
Ka/Ks Ratio 0.15949 (Ka = 0.0284, Ks = 0.1784)

SMCHD1  (Minke Whale)

Gene Details

structural maintenance of chromosomes flexible hinge domain containing 1

External Links

Gene match (Identifier: BACU014684, Minke Whale)

Protein Percentage 95.3%
cDNA percentage 95.93%
Ka/Ks Ratio 0.3964 (Ka = 0.0331, Ks = 0.0835)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 5430 bp    Location:77241..212137   Strand:+
>bmy_17736
ATGGCAGCGGCGGGCGGCGGCGGGCCCTCGGTGGGGACCGGAGAGGGCGGCGGAGGCGACGGCTACAGGACGGTGTACTTGTTTGACCGGCGGGAGAAGGAGTCGGAGCTCGGGGACCGGGCGCTGCAGGTCACGGAGCGCTCGGACTTCGCGGCGTTCCGCGCCTCAGTGTGTCAGCATTTTGATGAAACACAAGGAAAACCTGCCGTTGCAGTGATAGATAATGGAAGAGGAATGACCTCTAAACAGCTTAACAACTGGGCCGTGTATAGGTTGTCAAAATTTACAAGGCAAGGTGACTTTGAAAGTGATCATTCAGGATATGTTCGACCACTACCAGTGCCACGCAGTTTAAATAGTGATATTTCCTATTTTGGTGTTGGGGGCAAGCAGGCTGTTTTCTTTGTTGGACAATCAGCCAGAATGATAAGCAAACCTGCAGATTCCCAGGATGTTCATGAACTTGTACTTTCTAAAGAAGATTTTGAGAAGAAGGAGAAAAATAAAGAGGCAATATATAGTGGATATATTAGAAACAGAAAGAGTGCCTTTGGGCTAAGCCAGCTGGGTTCAGGCTGCATCCTAGTTTTCCTGAACTTGGAGGGCTGGCTAGGCATTGGTCCTGACCAAGTTAAGTGGCATATTTATCATTACTATGTTCATGGCCCAAAAGGAAATGAAAAACGTACATCAAAAGAAGTTGGACCTTTCAACAACATTGATATTGAAATTTCTATGTTTGAAAAGGGGAAGACACCTAAGATTATCAACCTAAGGGAAATACAAGATGACATGCAGACGTTGTATATAAATACAGCAGCCGATAGTTTTGAGTTCAAGGCTCATGTTGAAGGAGATGGTGTAGTGGAAGGGATTATCCGATATCACCCTTTTTTATATGATAGAGAAACGTACCCTGATGATCCATGCTTTCCATCAAAATTAAAAGATGAAGACGATGATGATGACTGTTTCATACTTGAGAAAGCAGCAAGAGGGAAAAGACCAATTTTTGAATGTTTTTGGAATGGACGACTAATACCATATACATCTGTTGAAGACTTTGACTGGTGTACTCCTCCTAAGAAGAGAGGGCTTGCACCGATTGAGTGCTACAATAGGATATCTGGTGCATTATTCACTAATGACAAATTCCAGGTCAGCACAAATAAACTGACCTTTATGGATCTTGAGCTAAAATTGAAAGATAAGAACACCCTTTTTACAAGGATTTTAAATGGACAGGAGCAGCGAATGAAAATTGACAGAGAATTTGCTTTATGGCTGAAGGACTGTCATGAAAAGTATGACAAACAAATAAAATTTACACTTTTTAAAGGAATAATTACACGTCCTGATCTTCCTTCTAAAAAGCAGGGCCCCTGGGCGACTTATTCAGCAATAGAATGGGATGGAAAAATATACAAAGCAGGACAGCTGGTCAAGACAATCAAGACACTTCCTCTCTTTTATGGAAGCATTGTAAAATTTTTTCTTTATGGTGATCATGATGGAGAAGTATATGCTACAGGAGGAGAGGTTCAAATTGCAATGCTGGATAGGACAGTTGCTGAGAAAGCTGTGAAAAAATATGTAGAAGATGAAATGGCAAGGCTCCCTGATAGATTGTCAGTAACTTGGCCTGAAGGAGATGAATTATTGCCAAATGAGATTAGGCCTGCTGGAACCCCCATTGGTGCATTAAGAATTGAAATATTGAATAAAAAGGGGGAAGCAATGCAAAAGCTTCCAGGAACAAGTCATGGAGGGTCAAAGAAACTCCTGGTTGAGCTCAAAGTTATACTACACTCTCCAAGTGGAAATAAAGAAATCATTTCACATATTAGTCAACATGGAGGAAAATGGCCTTACTGGTTTAAAAAAATGGAAAATATTCAAAAGTTGGGGAATTATACATTGAAATTACAAGTTGTACTGAATGAAAGTAATGCAGACACTTATGCAGGAAGACCACTACCATCTAAAGCAATTAAATTTTCTGTCAAAGAGGGTAAACCAGAGAAATTTTCATTTGGTCTTTTGGATCCTCCTTTTCGTGTTGGAGTCCCATTCAATATCCCTCTGGAGTTTCAGGATGAATTTGGTCATACTAGTCAACTATCAACTGATATTCAGCCAGTTTTTGAAGCAAGTGGTTTATCTTTACATTATGAAGAAATAACCAATGGACCAAATTGTGTCATTCGAGGTGTTACAGCTAAGGGCCCTGTAAACTCTTGTCAAGGCAAGAATTTTAATCTGAAGGTTATTCTTCCGGGTTTAAAAGAAGACTCACAGATTTTGAAAATTAGATTACTGCCAGGTCCCCCTCATCGATTGAAAGTGAAACCTGATTCTGAAATTTTAGTTATAGAAAATGGAACAGCTTTCCCATTTCAGGTAGAAGTTTTGGATGAATCAGACAATATAACAGCACAACCAAAATTGATTGTTCATTGTAAGTTTTCAGGTGCTCCAAACCTTCCACTCTACGTTGTGGATTGCAGTAGTTCTGGAACCAGTATTTTGTCAGGACCAGCAATTCAAGTTCAGAATATCAAAAAAGACCAGACACTTAAAGCAAAAATTGAAATACCTAGTTGTAAAGATGTGGCACCTGTGGAAAAGACTATTAAGTTGCTTCCCAGTAGCCATGTTGCAAGATTACAGATATTCAGTGTAGAAGGACAAAAGGCAATCCAGATCAAACATCAGGATGAGGTTAATTGGATAGCAGGAGATATTATGCATAACCTTATTTTTCAAATGTATGATGAAGGAGAAAGAGAAATCCATATAACATCAGCTTTAGCAGAGAAAATTAAAGTTAATTGGACTCCTGAGATTAACAAAGAGCACTTACTACAGGGTCTGCTTCCTGATGTACAAGTACCAACATCTGTAAAAGATATGCGCTATTGCCAGGTTTCATTCCAAGATGATCATGTGTCTTTGGAAAGTGCATTTACAGTAAGACCACTTCCTGATGAACCTAAACATCTAAAATGTGAATTAAAAGGAGGAAAAACAGTACAGATGGGCCAAGAGCTTCAAGGAGAAATAGTTATAATAGTTACAGATCAGTATGGAAATCAGATTCAAGCATTTTCACCAACTTCTCTATCTGCCTTGGGAATTGCTGGGATTGGACTTGATAGCTCACATTTGAAAACTACTTTTCAGGAAAATACACAAAGTATAAGTGTGAGAGGCATCAAATTTATTCCAGGTCCCCCTGGAAATAAGGATCTTTGTTTTACTTGGCGTGAGTTTTCTGACTTTATTCGAGTGCAGCTAATTTCTGGGCCACCAGCTAAACTTCTCCTTGTAGACTGGCCAGAGTTAAAGGAGTCCATTCCAGTGATTAATGGAAGAGAATTACAGAATCCTCTCATTGTTCAACTTTGTGATCAGTGGGATAATCCAGCACTTGTGCCACAGGTTAAAATAAGCCTTATAAAAGCTAACAATTTAAAGCTCACTCCTTCAAACCAACAGCATAAAACCGATGAAAGGGGCAGGGCTAATTTGGGAGTGTTCAATGTTTATGCCCCTAGAGGAGAACATATTATGCAGGTTAAAGCCATTTATAACAAGAATACCATAGAAGGACCCATAATTAAGTTAATGATTCTTCCAGACCCTGAAAAACCCATTCGTCTCAATGTTAAATATGACAAAGATGCTTCCTTTTTAGCAGGGGGTATTTTCACTGATTTTATGATTACTGTTATTTCTGAAGATGACAGTATCATTAAAAATATTAATCCAGCACGTATTTCCATGAAAATGTGGAAACTGTCAAACAGTGGGAACCGACCACCAGCAAATGCAGAAACATTTAGTTGTAATAAAATAAAGGATAATGACAAGGAAGATGGCTGCTTCTACTTCAGGGATAAAGCAATTCCTAACAAAGTGGGGACATATTGTATCCAGTTTGGTTTTATGATGGATAAAGCAAATATCCTTAACAGTGAGCAGATTATAGTGGATGTTCTACCTAATCAACCTGTGAAGTTAGTTCCTGAAATTCAGCCAGCTACACCAGCTGTTTCAAATGTTCGCTCAGTTGCCAGTAGGACCTTGGTCAAAGATTTGTATCTTCGTATCACGGATGACTACAACAATCATACTGGAATTGATTTGGTTGGCACTGTAATGGCTACCATCAAAGGTTCTAATGAGGAAGATGACACCCCACTCTTTATTGGGAAAGTTAGAACACTTGAATTTCCCTTTGTGAAAGGTTCAGCTGAAATCACGAGTCTAGTTCTGGCAGAAAATAGTCCTGGAAGGGATAGCACTGAGTATTTTATTGTGTTTGAGCCTCGGCTACCAGGCTTATCAAGAACATTAGAATCATATATCCTACCATTTATGTTTTACAATGATGTTAAGAAGCAGCAACAAATGGCAGCACTTACAAAAGAAAAGGACCAATTATCTAAGTCTATTATAATGTATAGAAGTTTATTTGATGCCAGCAAACAGCTTCTTGATGAGATGAAGTGCCAAGTTGAAGAAGCAAAATTAAAAGAGGCCCAGTTGCGAAATGAACTAAAAACACACAATATTGACATTCCTACAACACAACAGATTGCACACCTGGCACAAATTGAAGATGATAGAGCCGCAATGGTTATTTCTTGGCATCTGGCAAGTGACATGGACTGTGTGGTCACCCTGACCACTGATGCTGCACGTCGTATCTATGACGAAACCCAAGGTCGTCAGCAGGTGTTGCCCCTTGACTCTATTTATAAGAAGACTCTTCCAGATTGGAAAAGACCTCTGCCTCATTACCGAAATGGAAAATTGTATTTTAAACCCATTGGAGATCCCGTCTTTGCCCGAGATTTGTTAACATTTCCAGATAACGTAGAACATTGTGAAACAGTATTTGGTATGCTGTTAGCAGACACCATTATTTTGGATAATTTGGATGCTGCCAATCATTATAGAAAAGAGGTTGTTAAAATTACACACTGTCCTACACTGCTGACCAGAGATGGAGATCGCATTCGAAGTAATGGAAAGTTTGGGGGCCTTCAGAATAAAGCTCCTCCAATGGATAAACTTCGGGGAATGGTCTTTGGAGCTCCAGTACCAAAACAGTGCCTGATCTTAGGGGAACAAATAGATCTTCTTCAGCAGTACCGCACTGCTGTGTGCAGGTTGGGCAGTGTGAACAAGGACCTTAACGGGCAGTTGGAATACCTTCACACTCCGGATATGAAGAAGAAAAAACAGGAACTTGATGAACAAGAGAAGAATCTCAAACTGATAGAGCAAAAACTAGGTATGACTCCCACGCGTAAGTGTAATGACTCACTGCGTCATCCAATGACAGACTGTCCAATTCCTCCTAAGAGAATGAGAAGAGAAGCTACAAGACAAAATAGGATTATAACCAAAACAGATGTGTGA

Related Sequences

bmy_17736T0 Protein

Length: 1810 aa      View alignments
>bmy_17736T0
MAAAGGGGPSVGTGEGGGGDGYRTVYLFDRREKESELGDRALQVTERSDFAAFRASVCQHFDETQGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKSAFGLSQLGSGCILVFLNLEGWLGIGPDQVKWHIYHYYVHGPKGNEKRTSKEVGPFNNIDIEISMFEKGKTPKIINLREIQDDMQTLYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIEWDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPSGNKEIISHISQHGGKWPYWFKKMENIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNIPLEFQDEFGHTSQLSTDIQPVFEASGLSLHYEEITNGPNCVIRGVTAKGPVNSCQGKNFNLKVILPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQPKLIVHCKFSGAPNLPLYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPTSLSALGIAGIGLDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLVDWPELKESIPVINGRELQNPLIVQLCDQWDNPALVPQVKISLIKANNLKLTPSNQQHKTDERGRANLGVFNVYAPRGEHIMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLAGGIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDNDKEDGCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPEIQPATPAVSNVRSVASRTLVKDLYLRITDDYNNHTGIDLVGTVMATIKGSNEEDDTPLFIGKVRTLEFPFVKGSAEITSLVLAENSPGRDSTEYFIVFEPRLPGLSRTLESYILPFMFYNDVKKQQQMAALTKEKDQLSKSIIMYRSLFDASKQLLDEMKCQVEEAKLKEAQLRNELKTHNIDIPTTQQIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPIGDPVFARDLLTFPDNVEHCETVFGMLLADTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCRLGSVNKDLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPIPPKRMRREATRQNRIITKTDV*