Part of scaffold_1585 (Scaffold)

For more information consult the page for scaffold_1585 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HMGB4 ENSTTRG00000002275 (Bottlenosed dolphin)

Gene Details

high mobility group box 4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002126, Bottlenosed dolphin)

Protein Percentage 78.92%
cDNA percentage 85.95%
Ka/Ks Ratio 0.48757 (Ka = 0.1348, Ks = 0.2765)

HMGB4 ENSBTAG00000000335 (Cow)

Gene Details

High mobility group protein B4

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000438, Cow)

Protein Percentage 78.53%
cDNA percentage 82.55%
Ka/Ks Ratio 0.26395 (Ka = 0.1347, Ks = 0.5103)

HMGB4  (Minke Whale)

Gene Details

high mobility group box 4

External Links

Gene match (Identifier: BACU009643, Minke Whale)

Protein Percentage 86.91%
cDNA percentage 90.75%
Ka/Ks Ratio 0.50955 (Ka = 0.0851, Ks = 0.1671)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 639 bp    Location:57029..55976   Strand:-
>bmy_17754
ATGAGGCAGCATCTTGACAATCGTACGGCGGGGAAGGCAGACCCCGGGGCTTGTTACTACATCCGAGGGATGGAAAGCTCCCCAACTGAGCAAAGCCCACTGCCTCCAGGAAACCAAGGAGAAACATTCCGGGGAAACAAGTGCAAGCAGCAGCAGCCAAATACCTACCTTGGCTTTAAAGAGTTCTCTAGAAAGTGTTCGGAAAAATGGAGGTCTATCTCAAAGCACGAAAAGGCCAAATATGAAGCCCTGGCTAAGCTCGACAAAGCCCGATACCAGGAAGAGATGATGAATTACTCTGGCAGGAAGAAGAAGAAGAGAAAGCGGGATCCCCACGCACCCAGACGACCTCCATCATCCTTCCTACTCTTCTGCCAAGACCACTATGCCCAGCTCAAGTGGGAGAATCCAAACTGGTCAGTAGTGCAGGTGGCAAAGGCCTCGGGGAAGATGTGGTCAGCAATGACAGACAACGACAAGCAGCCCTATGAACAAAGGGCAGCTCTCCTGAAAGCTAAGTACCAAGAGGAACTGGGCATCTACCGTAATGCCAGGAAGAAGAGCCTCCAAGGGTCGGCTAAGAACCAGCGCAGAGGGTTCAAACAAACTGAGTCAGACACAGCTGATGGATCCAATTAG

Related Sequences

bmy_17754T0 Protein

Length: 213 aa      View alignments
>bmy_17754T0
MRQHLDNRTAGKADPGACYYIRGMESSPTEQSPLPPGNQGETFRGNKCKQQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNYSGRKKKKRKRDPHAPRRPPSSFLLFCQDHYAQLKWENPNWSVVQVAKASGKMWSAMTDNDKQPYEQRAALLKAKYQEELGIYRNARKKSLQGSAKNQRRGFKQTESDTADGSN*