Sequence detailsbmy_17780 (Coding sequence)

Part of scaffold_1587 (SequenceType object (1))

For more information consult the page for scaffold_1587 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SPRTNENSTTRG00000016576 (Bottlenosed dolphin)

Gene Details

SprT-like N-terminal domain

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000015714, Bottlenosed dolphin)

Protein Percentage 89.6%
cDNA percentage 92.91%
Ka/Ks Ratio 0.44578 (Ka = 0.0575, Ks = 0.129)

SPRTNENSBTAG00000006112 (Cow)

Gene Details

Zinc finger RAD18 domain-containing protein C1orf124 homolog

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000008030, Cow)

Protein Percentage 82.1%
cDNA percentage 85.94%
Ka/Ks Ratio 0.29427 (Ka = 0.1026, Ks = 0.3487)

Additional orthologs identified in other species via the OPTIC pipeline.

SPRTN (Human)   Sprtn (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1776 bp    Location:382925..371477   Strand:-
Raw sequence 
>bmy_17780
ATGTCCGTCCGGGACTCACGCAGTCCCTGTCACTATCGCCGTCGCCGGTGCCGCCGCTGTCGAGGCCCACCCAAGCCGGGTCCAACTCCAGGGCTGCGGAAGCAGGCTGGCAGAGAGACGAGTACGCCTGCGCCCGGCTATGAACTTCAGGCACTGCGCCTGCGCAGCAGGGCCAGCGGCCTAGGGCGCATGCGCCGGAGAAGCTATCGCGGAAGCGAGTGGAGGGCGGGGCAGAGAGACGATGAGCTCGACCCGGCCGTCGGAGGCTCCGGGACGTGGAGTCCCCCGGCCTGGACCCCGGCAGCCATGGATGAGGACCTGGTTTTGGCGCTGCGGCTTCAGGAGGAGTGGAACTTGCAGGTCTCGGAGCGCGATCCGGCCCAGGAGCCCCTGTCTCTGGTGGACGCGTCCTGGGAGCTGGTGGACCCCACCCCCGATTTGCAGGCCCTGTTTGTGCAGTTCAACGACCGTTTCTTCTGGGGCCGTCTGGAGGCGGTCGAGGTGAAGTGGAGCATGCGAATGACGCTGTGCGCTGGGATATGCAGCTACGAAGGCAGGGGCGGAATGTGTTCCATCCGCCTCAGTGAACCCCTCTTAAAGTTGAGACCAAGAAAGGATCTGGTGGAGAATAAAACCCTCTTGCATGAAATGATACATGCCTATTTATTTGTCACGAATAACGATAAAGATCGGGAAGGGCACGGTCCAGAGTTTTGTAAACATATGCATCGCATCAATCGCCTGACGGGAGCCAATATAACGGTGTACCATACTTTCCACGACGAGGTGGATGAGTACCGGCGACACTGGTGGCGCTGCAATGGGCCGTGTCAGCACAAGAAGCCATATTACGGCTACGTGAAACGCGCCACCAACAGGGCCCCCTCTGCTCATGACTACTGGTGGGCTGAGCACCAGAAAACCTGTGGAGGCACCTACATAAAAATCAAGGAACCCGAGAGCTACTCAAAAAAAGGCAAAGGAAAGACAAAACTAGGAAAGCAGCCAGTATCAGAAGCAGAGAATAAAGGTAAACCAAACAGAGGGGAGAGACAGTTGTTAATCCCTTTCAGTGGGAAAGGGTATGTTCTAGGGGAAACCAGCAATTCGCCTTCATCTGGGAAATGCATCACTTCACATGCTGTTAAAACCCAGGATCTTTTAAATCAGGGCCATTCAGCAAATGCCTTAAGACCCAATTCGAAACCTGAGGTGACATTTGAACAGAACGGTTCACGTGGAAAAACCTCCCTAGTCTCCGCAGCCCTCAGTTCCGGTCACCAAAGTGTYGTCAGCAACTACTTCTCGAGAGTCTCTGTCTCCCAGCACAAGGCTTTCAGAAGTGTGAGTGGGTCTCCGATGAAAAGCCTCACAGTTGGTGACATCACTAAAAACTCGGTCTCTTCTAGTTCTCAATGGAGGGTGACATCTTCTAAGATACCCCGAAGAAATCCTTTAAAAGCAGTGGAATCGACATCTGTGACTGCACCCCAGGATGCACGTGGGCCTGAAGATAAATTCCCAAGTAAACGCCCCAGGCTCGAAGACAGGACTGTTTTCGAGAACTTTTTTATCAAGAACGAGCAAACGCAGAGCGGCGGGAACGCGCCGGAGCGTGGATCACGTCCTGCAGCTGCAGCGCCGAGTGCCAGCGGTTCGCCCAGTCAGAGCAGAATGGTTCACTGTCCTGTGTGTCAGAGTGAAGTTGTGGAGTCTCAGATTAACCAGCACTTGGACTGGTGCCTTGCCGGCGGGAGCCTCCAAGTCAGAAGCTGA

Related Sequences

bmy_17780T0 SequenceType object (3)

Length: 592 aa      View alignments
>bmy_17780T0
MSVRDSRSPCHYRRRRCRRCRGPPKPGPTPGLRKQAGRETSTPAPGYELQALRLRSRASGLGRMRRRSYRGSEWRAGQRDDELDPAVGGSGTWSPPAWTPAAMDEDLVLALRLQEEWNLQVSERDPAQEPLSLVDASWELVDPTPDLQALFVQFNDRFFWGRLEAVEVKWSMRMTLCAGICSYEGRGGMCSIRLSEPLLKLRPRKDLVENKTLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINRLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHKKPYYGYVKRATNRAPSAHDYWWAEHQKTCGGTYIKIKEPESYSKKGKGKTKLGKQPVSEAENKGKPNRGERQLLIPFSGKGYVLGETSNSPSSGKCITSHAVKTQDLLNQGHSANALRPNSKPEVTFEQNGSRGKTSLVSAALSSGHQSVVSNYFSRVSVSQHKAFRSVSGSPMKSLTVGDITKNSVSSSSQWRVTSSKIPRRNPLKAVESTSVTAPQDARGPEDKFPSKRPRLEDRTVFENFFIKNEQTQSGGNAPERGSRPAAAAPSASGSPSQSRMVHCPVCQSEVVESQINQHLDWCLAGGSLQVRS*