Part of scaffold_1604 (Scaffold)

For more information consult the page for scaffold_1604 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COCH ENSTTRG00000005098 (Bottlenosed dolphin)

Gene Details

cochlin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004796, Bottlenosed dolphin)

Protein Percentage 88.85%
cDNA percentage 89.74%
Ka/Ks Ratio 0.34442 (Ka = 0.0183, Ks = 0.0531)

BT.27005 ENSBTAG00000021844 (Cow)

Gene Details

cochlin precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000049747, Cow)

Protein Percentage 95.82%
cDNA percentage 94.67%
Ka/Ks Ratio 0.1243 (Ka = 0.0195, Ks = 0.1566)

COCH  (Minke Whale)

Gene Details

cochlin

External Links

Gene match (Identifier: BACU008694, Minke Whale)

Protein Percentage 99.43%
cDNA percentage 99.43%
Ka/Ks Ratio 0.16253 (Ka = 0.002, Ks = 0.0121)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1656 bp    Location:227585..241380   Strand:+
>bmy_17801
ATGTCTGCAGCCTGGATCCCGGTTCTCTGCCTTGGTGTCTGTCTGCTGCTGCTGCTGCCAGAGCCTGCGGGCAGCGAGGGAGCCGTTCCCATCGCTATCACATGCTTTACCAGAGGCCTGGACATCAGGAAAGAAAAAGCAGATGTGCTCTGTCCAGGGGGTTGCCCTCTGGAGGAATTCTCCGTGTTTGGGAACATAGTATATGCTTCTGTATCAAGCATCTGTGGTGCCGCTGTCCACAGGGGGGTAATCAGCAACTCAGGGGGACCCGTACGAATCTATAGCCTACCAGGTCGAGAAAACTATTCCTCAGTAGTTGCCAATGGCATCCAGTCTCAGACGCTTTCCAGATGGTCTGCTTCTTTCACAGTGACAAAAGGCAAAAGTGGTGCCCAGGAAGCCACAGGACAAGCAGTGTCCACAGCACGTCCAGCAATAGGTAAACGACTAAAGAAAACACCGGAGAAGAAAACTGGCAATAAGGACTGTAAAGCAGACATTGCATTTCTGATTGATGGAAGTTTTAATATCGGGCAACGCCGATTTAATCTACAGAAGAATTTTGTTGGGAAAGTGGCTCTAATGTTGGGAATTGGAACAGAAGGACCGCACGTGGGCCTTGTTCAAGCCAGTGAACATCCCCAAATAGAATTTTACTTGAAAAACTTTACATCAGCCAAAGATGTTTTGTTTGCCATAAAGGAAGTAGGTTTCAGAGGGGGTAATTCCAATACAGGAAAAGCCCTGAAGCACACCGCCCAGAAATTCTTCACAGAAGACACCGGAGTGAGAAAAGGGATTCCCAAAGTGGTGGTGGTATTTATTGATGGCTGGCCTTCTGATGACATCGAGGAAGCAGGCATTGTGGCCAGAGAGTTTGGTGTCAATGTATTTATAGTTTCTGTGGCTAAGCCTATCCCTGAGGAACTGGGAATGGTTCAGGATGTTGCATTTGTTGACAAGGCTGTCTGTCGGAATAATGGCTTCTTCTCTTACCACATGCCCAATTGGTTTGGCACCACAAAATACGTAAAACCTCTGGTACAGAAGCTCTGCACTCATGAGCAAATGATGTGCAGCAAGACCTGTTATAACTCAGTGAACATCGCCTTTCTAGTTGATGGCTCCAGTAGTATTGGAGAAAGTAATTTCCGCCTCATGCTTGAATTTGTTTCCAACATAGCTAAGACTTTTGAAATCTCAGACATTGGTGCCAAGATAGCTGCCGTACAGTTCACCTACGATCAGCGCACAGAATTCAGTTTCACTGACTATAGCACCAAAGAGAATGTCCTAGCCGTTATCAGAAACATCCGCTATATGAGTGGTGGGACAGCTACTGGTGATGCCATTTCCTTCACTGTTAGAAATGTGTTTGGTCCCATGAGGGACAGTCCCAACAAGAACTTCCTGGTAGTTRTCACAGATGGGCAGTCCTATGATGATGTTCGAGGGCCTGCTGCTGCTGCACACGATGCAGGTATCACCATCTTCTCTGTTGGTGTGGCTTGGGCACCTCTGGATGACCTGAAAGATATGGCCTCTAAACCAAAGGAGTCGCATGCTTTCTTCACAAGAGAGTTCACAGGATTAGAACCAATTGTTTCTGATGTCATCAGAGGCATCTGTAGAGATTTCTTAGAATCCCAGCAATAA

Related Sequences

bmy_17801T0 Protein

Length: 552 aa      View alignments
>bmy_17801T0
MSAAWIPVLCLGVCLLLLLPEPAGSEGAVPIAITCFTRGLDIRKEKADVLCPGGCPLEEFSVFGNIVYASVSSICGAAVHRGVISNSGGPVRIYSLPGRENYSSVVANGIQSQTLSRWSASFTVTKGKSGAQEATGQAVSTARPAIGKRLKKTPEKKTGNKDCKADIAFLIDGSFNIGQRRFNLQKNFVGKVALMLGIGTEGPHVGLVQASEHPQIEFYLKNFTSAKDVLFAIKEVGFRGGNSNTGKALKHTAQKFFTEDTGVRKGIPKVVVVFIDGWPSDDIEEAGIVAREFGVNVFIVSVAKPIPEELGMVQDVAFVDKAVCRNNGFFSYHMPNWFGTTKYVKPLVQKLCTHEQMMCSKTCYNSVNIAFLVDGSSSIGESNFRLMLEFVSNIAKTFEISDIGAKIAAVQFTYDQRTEFSFTDYSTKENVLAVIRNIRYMSGGTATGDAISFTVRNVFGPMRDSPNKNFLVVXTDGQSYDDVRGPAAAAHDAGITIFSVGVAWAPLDDLKDMASKPKESHAFFTREFTGLEPIVSDVIRGICRDFLESQQ*