Sequence detailsbmy_17806 (Coding sequence)

Part of scaffold_1592 (SequenceType object (1))

For more information consult the page for scaffold_1592 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LHX9ENSBTAG00000013499 (Cow)

Gene Details

LIM/homeobox protein Lhx9

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000041150, Cow)

Protein Percentage 97.98%
cDNA percentage 96.05%
Ka/Ks Ratio 0.04196 (Ka = 0.0084, Ks = 0.2)

LHX9 (Minke Whale)

Gene Details

LIM homeobox 9

External Links

Gene match (Identifier: BACU001710, Minke Whale)

Protein Percentage 87.89%
cDNA percentage 91.07%
Ka/Ks Ratio 0.587 (Ka = 0.0867, Ks = 0.1478)

Additional orthologs identified in other species via the OPTIC pipeline.

LHX9 (Human)   Lhx9 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1218 bp    Location:42508..30564   Strand:-
Raw sequence 
>bmy_17806
ATGGAAATAGTGGGGTGCCGAGCAGAAGACAACTCGTGTCCTTTCCGCCCCCCAGCCATGCTCTTCCACGGGATCTCCGGAGGCCACATCCAAGGCATCATGGAGGAGATGGAGCGCAGATCCAAGACAGAGGCCCGCCTGGCCAAAGGCGCCCAGCTCAACGGTCGCGACGCGGGGATGCCTCCGTTGAGCCCCGAGAAGCCCGCCCTGTGCGCCGGCTGCGGGGGCAAGATCGCCGACAGGTACTACCTGCTGGCCGTGGACAAGCAGTGGCACCTGAGGTGCCTGAAATGCTGTGAATGTAAGCTGGCCCTCGAGTCCGAGCTCACCTGCTTCGCCAAGGACGGTAGCATTTACTGCAAGGAGGACTACTACAGAAGGTTCTCTGTGCAGAGATGTGCCCGCTGCCACCTTGGCATCTCCGCCTCCGAGATGGTCATGCGCGCCCGAGACTCCGTCTACCACCTGAGCTGTTTCACCTGCTCCACCTGCAACAAGACCCTGACCACGGGCGATCATTTTGGCATGAAGGACAGCCTGGTGTACTGTCGCGCCCACTTCGAGACCCTCTTGCAAGGGGAGTATCCACCTCCGCTGAGCTACACCGAGCTGGCGGCCAAGAGCGGCGGCTTGGCCCTGCCTTACTTCAACGGCGCTGGCACCGTGCAGAAGGGGCGGCCCAGGAAGCGGAAGAGCCCCGCGCTGGGGGTGGACATCGTCAGTTACAACTCAGGTTGTAACGAGAATGAGGCCGACCATCTGGACCGAGATCAGCAGCCTTACCCGCCCTCGCAGAAGACCAAGCGCATGCGCACCTCCTTCAAGCATCACCAGCTCCGGACCATGAAATCCTACTTTGCCATCAACCACAACCCGGACGCCAAGGACCTCAAGCAGCTTGCTCAGAAAACAGGCCTGACCAAAAGAGTTTTGCAGAAATCCATTGGGATTGGTTTGCAGGTTTGGTTCCAAAACGCACGAGCCAAATTCAGAAGGAACCTTTTGCGGCAGGAGAATGGGGGTGTTGATAAAGCTGATGGCACGTCGCTTCCGGCCCCGCCCTCAGCAGACAGCGGCGCGCTCAGTCCACCCGGCACTGCGACCACTTTAACAGACCTGACCAATCCCACTATCACTGTAGTGACAGCCGTGACCTCTAACATGGACAGCCACGAATGCGGAAGCCCCTCGCAAACTACCTTAACGAACCTTTTCTAA

Related Sequences

bmy_17806T0 SequenceType object (3)

Length: 406 aa      View alignments
>bmy_17806T0
MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPPLSYTELAAKSGGLALPYFNGAGTVQKGRPRKRKSPALGVDIVSYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQKSIGIGLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALSPPGTATTLTDLTNPTITVVTAVTSNMDSHECGSPSQTTLTNLF*