Part of scaffold_1624 (Scaffold)

For more information consult the page for scaffold_1624 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDGFRA ENSTTRG00000012375 (Bottlenosed dolphin)

Gene Details

platelet-derived growth factor receptor, alpha polypeptide

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011756, Bottlenosed dolphin)

Protein Percentage 96.72%
cDNA percentage 96.67%
Ka/Ks Ratio 0.18611 (Ka = 0.0179, Ks = 0.0963)

BT.67124 ENSBTAG00000007173 (Cow)

Gene Details

alpha-type platelet-derived growth factor receptor precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000009441, Cow)

Protein Percentage 93.18%
cDNA percentage 92.6%
Ka/Ks Ratio 0.15396 (Ka = 0.036, Ks = 0.2337)

PDGFRA  (Minke Whale)

Gene Details

platelet-derived growth factor receptor, alpha polypeptide

External Links

Gene match (Identifier: BACU002235, Minke Whale)

Protein Percentage 95.94%
cDNA percentage 96.32%
Ka/Ks Ratio 0.31386 (Ka = 0.0259, Ks = 0.0826)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2139 bp    Location:60754..887   Strand:-
>bmy_17856
ATGGGGACTTCCTATTGGGCACTCCTGGTCTTAGGCTGTCTCCTCACAGGGCCGAGCCTCATCCTCTGCCAGCTTTCATTACCCTCCATCCTGCCCAATGAAAACGAGAGGGTCGTGCAGCTGAATTCATCCTTTTCTCTGAGATGCTTTGGGGAGAGTGAAGTGAGCTGGCAGTACCCCATGTCTGAAGAAGAGAACCCCAATGTGGAAATCAGAAACGAGGAGAACAACAGTGGCCTTTTTGTGACGGTGCTGGAAGTGGTCAGTGCCTCGGCGGCCCACACAGGGCTGTACACTTGCTATTACAACCACACGCAGTTGGAAGAAAGCGAGATCGAGGGCAGACGCATTTACATCTATGTGCCAGACCCAGATGTAGCCTTCGTACCTCTAGGAATGACAGATTACTTGGTCATCGTGGAGGACGATGATTCTGCCATCATCCCTTGTCGAACGACTGATCCTGAGACACCAGTGATCTTACTCAGCAGTGACGGGGTGGTACACGCCTCCTATGACAGCAGACAAGGCTTTAATGGAACCTTCACTGTCGGACCCTATATCTGCGAGGCCACCGTCAGGGGGAAGAAGTTCCAGACCATCCCATTCAATGTTTATGCTTTAAAAGCAACATCAGAACTTGATCTGGAAATGGAAGCTCTTAAAACTGTATATAAGGCAGGGGAATCGATTGTGGTCACCTGCGCCGTCTTTAACAATGAGGTTGTGGACCTTCAGTGGACTTACCCTGGACAAGTGAATTTATTTGGCTACAACTTGCTGAAACAAAGTCCTTTTCTTTTAAGGTATCGAAGCAAATTAAAGCTGATCCGAGCTAAGGAAGAAGACAGCGGCCATTATACTATTGTAGTTCAAAATGAAGACGATGTGAAGAGTTATACTTTTGAACTCTTAACTCAAGTTCCATCATCCATTCTGGACTTGGTCGACGACCACCATGGCTCTAACGGGGGCCAGACAGTGAGATGCACAGCTGAAGGAACCCCTCTTCCTGATATTGAGTGGATGATTTGCAAAGATATTAAGAAATGTAATAACGAAACTTCATGGACGATTTTGGCCAACAATGTCTCAAACATCATCACGGAGGTCCACCCCCGAGACAGGAGCATGGTGGAGGGCCAAGTGACATTCGCCAAAGTGGAGGAGACCATTGCAGTCCGATGCCTGGCTAAGAATCTCCTCGGGGTGGAGAGCCGAGAGCTGAAGTTGGTGGCTCCCAGCCCCATTTACATCATCACTGAGTACTGCTTCTATGGGGATTTGGTCAACTATTTGCATAAGAATAGGGACAGCTTCTTGAGCCGCCACCCAGAGAAGCCAAAGAAAGAGCTGGACATTTTTGGATTGAACCCTGCTGACGAAAGCACACGAAGACCTCTAAATGCATCTCTGGCCAGGGATGCCCCAGTGCTCATATCTTGTGAGAAACTATCTGAGGATTTTTACGTTATTTTATCTTTTGAAAATAACGGTGACTACATGGACATGAAGCAAGCTGACACTACACAGTATGTCCCCATGCTGGAAAGGAAAGAGGTTTCTAAGTACTCAGACATCCAGAGAGCACTGTATGATCGCCCAGCCTCATATAAGAAGAAATCCATGTTAGACTCAGAAGTCAAAAACCTCCTTTCGGATGATAACTCAGAAGGCCTTACTTTGTTGGATTTGTTGAGCTTTACCTATCAAGTTGCCCGAGGAATGGAGTTTTTGGCTTCAAAAAATAGTTATGAAAAGATCCACCTGGACTTCCTGAAGAGTGACCATCCCGCCGTGGCACGTATGCGCGTCGACTCCGACAACGCCTACATTGGCGTCACCTACAAAAACGAGGAGGACAAGCTGAAGGACTGGGAGGGTGGCCTCGACGAGCAGAGGCTGAGCGCGGACAGTGGCTACATCATCCCTCTGCCTGACATCGACCCTGTTCCTGAGGAGGAAGACCTGGGCAAAAGGAACAGACACAGCTCGCAGACCTCTGAAGAGAGTGCCATTGAGACAGGTTCCAGCAGTTCTACCTTCATCAAGAGAGAGGATGAGACCATCGAGGACATCGACATGATGGACGACATTGGCATAGACTCMTCGGACCTGGTGGAAGACAGCTTCCTGTAA

Related Sequences

bmy_17856T0 Protein

Length: 713 aa      View alignments
>bmy_17856T0
MGTSYWALLVLGCLLTGPSLILCQLSLPSILPNENERVVQLNSSFSLRCFGESEVSWQYPMSEEENPNVEIRNEENNSGLFVTVLEVVSASAAHTGLYTCYYNHTQLEESEIEGRRIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVILLSSDGVVHASYDSRQGFNGTFTVGPYICEATVRGKKFQTIPFNVYALKATSELDLEMEALKTVYKAGESIVVTCAVFNNEVVDLQWTYPGQVNLFGYNLLKQSPFLLRYRSKLKLIRAKEEDSGHYTIVVQNEDDVKSYTFELLTQVPSSILDLVDDHHGSNGGQTVRCTAEGTPLPDIEWMICKDIKKCNNETSWTILANNVSNIITEVHPRDRSMVEGQVTFAKVEETIAVRCLAKNLLGVESRELKLVAPSPIYIITEYCFYGDLVNYLHKNRDSFLSRHPEKPKKELDIFGLNPADESTRRPLNASLARDAPVLISCEKLSEDFYVILSFENNGDYMDMKQADTTQYVPMLERKEVSKYSDIQRALYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLLSFTYQVARGMEFLASKNSYEKIHLDFLKSDHPAVARMRVDSDNAYIGVTYKNEEDKLKDWEGGLDEQRLSADSGYIIPLPDIDPVPEEEDLGKRNRHSSQTSEESAIETGSSSSTFIKREDETIEDIDMMDDIGIDSSDLVEDSFL*