Part of scaffold_1620 (Scaffold)

For more information consult the page for scaffold_1620 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PTCD3 ENSTTRG00000008601 (Bottlenosed dolphin)

Gene Details

pentatricopeptide repeat domain 3

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008154, Bottlenosed dolphin)

Protein Percentage 90.13%
cDNA percentage 91.25%
Ka/Ks Ratio 0.33075 (Ka = 0.0262, Ks = 0.0792)

PTCD3 ENSBTAG00000006482 (Cow)

Gene Details

Pentatricopeptide repeat-containing protein 3, mitochondrial

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000008498, Cow)

Protein Percentage 89.39%
cDNA percentage 91.43%
Ka/Ks Ratio 0.27666 (Ka = 0.0547, Ks = 0.1976)

PTCD3  (Minke Whale)

Gene Details

pentatricopeptide repeat domain 3

External Links

Gene match (Identifier: BACU005898, Minke Whale)

Protein Percentage 97.39%
cDNA percentage 98.76%
Ka/Ks Ratio 0.72236 (Ka = 0.0098, Ks = 0.0135)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1614 bp    Location:73909..42285   Strand:-
>bmy_17877
ATGGCGGCCGTGTCGTCGGCTCGCTGGCTGAGGGTCCGCCGCGGGCTTTGCCTACCGCTGACGGGTCGGCGGGCAGGTCTCTGCGGACGGGCCCCCAGTAGCAGGGATAAAGTGGCTGTCCTTCAGGCACTTGGATCCACGGTACACAGGGATGCTRCAGCTGCCCCTTATGTATTTCAAGATGATCCTTATCTCAYACCAACATCCTCTATGGAATCTCATTCATTTTTGTTGGCAAAGAAGTCCGGGGAGAATGCAGCAAAATTTGTTATTAATTCATATCCCAAATATTTTCAGAAAGACATAGCTGAACCTCATATACCGTGTTTTATGCCTGAGTACTTTGAACCTCAGATTGAAGATATAAGTGAGGCTGCTCTGCAGGAACGAATCAAGCTCAGAAAAGTCAAAGCTTCTGTGGACATGTTTGATCAGCTCTTGCAAGCAGGAACCACCGTATCTCTGGAAACAACTAACCGTCTCTTGGATTTATTGTGTTACTGTGGTAACCAAGAGCCCTCAACTRATTATAATTTTCAACAACGTGAACAAGCAGAAGAGTTGGACCTGCTGAAACAAATGGTTGCACAGAACGTGAAACCCAATCTACAGACTTTTAATACTATTCTGAAATGTCTCCGACGATTTCATGCATTTGGAAAATTGCCAGCCTTACAGACTTTACGGGAAATGAAAGCCATTGGAATAGAAAGCCCTTCAAAAGGATCGTCCCTCATCATCTATGACATCATGAACGAATTAATGGGAAAGAAATTTTCTCCAAAGGACCCGGATGACGATATGTTTTTTCAGTCAGCCATGAGGGTTTGCTCATCTCTCAGAGATCTAGAACTTGGTTACCAGGTCCATGACCTTTTAAACACTGGAGACAACCGGAAATTCATTGGACCCGATCATCGGCGTAATTTCTATTATTCCAAGTTCTTTGGTTTGCTTTGTCTAATGGAACAAATTGATGTCACCTTGAAGTGGTATAAGGACCTGATACCTTCAGTATTCTTTCCACATTCCCAAACACTGATAGATCTTCTCCAAGCATTAGATGTGGCCAATCGGCTAGAATTGATTCCTCAGATCTGGAAAGATAGTAAAGAATACGGTCATACTTTTCGCCGTGACCTTAAAGAAGAGATTCTGATGCTCATGGCAAGGGATCGGCACCCACCAGAGGTGGCGTTTGCTGACTGTGCTGCAGATATCAAATCGACTTATGAAAGCCAGGATGCCAGACAGACGGCTCCCAGTTGGCTGGCCAGCTCTCTGAACTACATAGCCGTCCTCTTCTTAAGGGCCGGGAGAACCCAGGAAGCCTGGAAAATGCTGGGGCTTTTCAGGAAACATAATAAGATCCCTAGGAATGAGTTGCTGAATGAGTTTATGGGCAGTGCAAAAGCATCCGGCAGCCCTGCCCAGGCCATTGAGATAGTGAAGCTGGCAGGTGCCTTCAGCTTACCTATTTGTGAGAGCCTCACCCAGAGATTAATGGCTGACTTCACCCTCAGCCAGGAGCAGAAGGAAGCCCTGGGAGACCTAACTGCATTGACCAGTGACAGCAGCAGTGACAGTGACAATGACGTCGGCGAAGGCAAATAA

Related Sequences

bmy_17877T0 Protein

Length: 538 aa      View alignments
>bmy_17877T0
MAAVSSARWLRVRRGLCLPLTGRRAGLCGRAPSSRDKVAVLQALGSTVHRDAXAAPYVFQDDPYLXPTSSMESHSFLLAKKSGENAAKFVINSYPKYFQKDIAEPHIPCFMPEYFEPQIEDISEAALQERIKLRKVKASVDMFDQLLQAGTTVSLETTNRLLDLLCYCGNQEPSTBYNFQQREQAEELDLLKQMVAQNVKPNLQTFNTILKCLRRFHAFGKLPALQTLREMKAIGIESPSKGSSLIIYDIMNELMGKKFSPKDPDDDMFFQSAMRVCSSLRDLELGYQVHDLLNTGDNRKFIGPDHRRNFYYSKFFGLLCLMEQIDVTLKWYKDLIPSVFFPHSQTLIDLLQALDVANRLELIPQIWKDSKEYGHTFRRDLKEEILMLMARDRHPPEVAFADCAADIKSTYESQDARQTAPSWLASSLNYIAVLFLRAGRTQEAWKMLGLFRKHNKIPRNELLNEFMGSAKASGSPAQAIEIVKLAGAFSLPICESLTQRLMADFTLSQEQKEALGDLTALTSDSSSDSDNDVGEGK*