Part of scaffold_1620 (Scaffold)

For more information consult the page for scaffold_1620 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SFTPB ENSTTRG00000008974 (Bottlenosed dolphin)

Gene Details

surfactant protein B

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008512, Bottlenosed dolphin)

Protein Percentage 69.03%
cDNA percentage 80.97%
Ka/Ks Ratio 0.6167 (Ka = 0.2058, Ks = 0.3337)

SFTPB ENSBTAG00000021230 (Cow)

Gene Details

Pulmonary surfactant-associated protein B

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000042549, Cow)

Protein Percentage 66.25%
cDNA percentage 77.39%
Ka/Ks Ratio 0.38743 (Ka = 0.2269, Ks = 0.5857)

SFTPB  (Minke Whale)

Gene Details

surfactant protein B

External Links

Gene match (Identifier: BACU005906, Minke Whale)

Protein Percentage 84.95%
cDNA percentage 87.88%
Ka/Ks Ratio 0.45366 (Ka = 0.1099, Ks = 0.2422)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 960 bp    Location:427538..460690   Strand:+
>bmy_17884
ATGCCCAGGGAGTCTGGTCCAGGCTCAGCTGCTCATCTGGACTTGGCTGATGAAGATGACCTGTGCCAGGAATGTGAGGACATCACCTACGTTCTCACCAAGATGGCCAAGGAGGTCATTTCCCAGGGCACGATACGGGAATTGCTGGAGCACGAGTGCGACATCTTCCCGCTGAAGCTGCTGGGGTCCCAGTGCCACCGCATGCTGGACACCTACTTCCCACTGGTCATCCACCACTTCCAGAACCAGATGAGCCCGAAGGCCACCTGCGAGCACTTGGGCCTGTGCAAACGCAGGCATCCAGAGCCAGGGCAGGAGCCAGAGCCGTCAGGCCCCCTGCAGGACAAGCTGGTCCTCTCCGTGCTGCCTGGGGCCCTCCAGGCGAGGCCCGGGCCGCAGACACAGGATCTCTCCGAGCAGCGGTTCCCCCTCCCCATCCCCCTCCCTGTCTGCTGGCTCTGCAGGACTTTGATCAAGCGGATCCAAGCTGTGATTCCCAAGGGTACTCTGGCCACAACTGTGGCCCAAGTGTGCCACGTGGTACCCCTGGTGGTGGGCGGCATCTGCCAGTGTCTTGCCGAGCGCTACGTCGCCATCCTGCTAAACACACTGCTGGACCGCACGCTGCCCCAGCTGGTCTGCGGCCTCATCCTCCGGTGCTCCAGCGAGGACGGCGCTGGCCCAGCCCTCACCGCKCTGGGGTCCCTGCCAGGAGAATGGCTACCRCAAGACACTGAGTGCCAGCTCTGCGTGTCTGTGACCACCCAGGCAGGGAAGAGCAGTGAGCAGGCCATGCCACAGGCAATGCGCCAGGCCTGCCTGGGCTCCTGGCTGGATAGGCAAAAGGTGAGGGGCAGGCACATCAGGGGCTTGGGACCCAGGGGCTGCCGGTGGTGGAGGGTTGAGCCCAGGAAAGGCTTCCCAGCCAGAGATACACTGAGATACTTCCCCCGCTCTTAA

Related Sequences

bmy_17884T0 Protein

Length: 320 aa      View alignments
>bmy_17884T0
MPRESGPGSAAHLDLADEDDLCQECEDITYVLTKMAKEVISQGTIRELLEHECDIFPLKLLGSQCHRMLDTYFPLVIHHFQNQMSPKATCEHLGLCKRRHPEPGQEPEPSGPLQDKLVLSVLPGALQARPGPQTQDLSEQRFPLPIPLPVCWLCRTLIKRIQAVIPKGTLATTVAQVCHVVPLVVGGICQCLAERYVAILLNTLLDRTLPQLVCGLILRCSSEDGAGPALTALGSLPGEWLPQDTECQLCVSVTTQAGKSSEQAMPQAMRQACLGSWLDRQKVRGRHIRGLGPRGCRWWRVEPRKGFPARDTLRYFPRS*