Sequence details bmy_17904 (Coding sequence)

Part of scaffold_1646 (Scaffold)

For more information consult the page for scaffold_1646 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LEPRE1 ENSTTRG00000001356 (Bottlenosed dolphin)

Gene Details

leucine proline-enriched proteoglycan (leprecan) 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001275, Bottlenosed dolphin)

Protein Percentage 75.2%
cDNA percentage 74.13%
Ka/Ks Ratio 0.12236 (Ka = 0.0165, Ks = 0.1349)

LEPRE1 ENSBTAG00000017382 (Cow)

Gene Details

prolyl 3-hydroxylase 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023110, Cow)

Protein Percentage 94.12%
cDNA percentage 93.06%
Ka/Ks Ratio 0.10317 (Ka = 0.0259, Ks = 0.2506)

LEPRE1  (Minke Whale)

Gene Details

leucine proline-enriched proteoglycan (leprecan) 1

External Links

Gene match (Identifier: BACU000371, Minke Whale)

Protein Percentage 98.04%
cDNA percentage 98.28%
Ka/Ks Ratio 0.15348 (Ka = 0.0076, Ks = 0.0492)

Additional orthologs identified in other species via the OPTIC pipeline.

LEPRE1 (Human)   Lepre1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1227 bp    Location:213678..194969   Strand:-
Raw sequence 
>bmy_17904
ATGGCGGCGCGCTCGTTGAGGCTGCTGACCACATTGCTGGCGGTCGCCACCGCTGCCTGCCGGTCCGAGGCGGAGTCCGAGGCGGAATGGGACATGACGGCGCCTGATCTGCTCTTCGCGGAGGGGGCCGCGGCCTATGCTCGCGGTGACTGGGCTGGGGTGGTTCTGAGCATGGAGCGGGCGTTGCGCTCGCGGGCCGCCCTGCGCGCCCTTCGCCTGCGCTGCCGCACCCGATGTGCCGCCGACCTCCCATGGGAGCTGGACCCGGACTCGCCCCCCAGCCTGGCGCCGGCCTCGGGCGCCGCCGCCCTGCACGACCTACGCTTCTTCGGGGGCTTGCTGCGCCGCGCCGCTTGCCTGCGCCGCTGCCTCGGGCCGTCGGCCACCCACCCGCTCAGCGAGGAGCTGGAGTTGGAGTTCAGCAAGCGGAGCCCCTACAACTACCTACAGGTCGCCTACTTCAAGATAAACAAGTTGGAGAAAGCCGTGGCAGCAGCTCATACCTTCTTCGTGGGCAATCCTGAGCACATGGAGATGCGTCAGAACCTGGACTATTACCAAACCATGTCTGGGGTGAAGGAAGCCGACTTCAAGGACCTTGAGGCCAAACCCCATATGCACGAGTTTCGGCTGGGAGTGCGCCTCTACTCCGAGGAGCAGCTGCAGGAAGCCGCGCCCCACCTGGAGACGGCGCTGCGGGAGTACTTCGTGGCAGACGAGGAGTGCCGTGCCCTCTGTGAAGGGCCTTATGACTACGACGGCTACAACTACCTGGAGTACAACGCTGACCTCTTCCAGGCCATCACAGACCATTACATCCAGGTCCTCAGCTGTAAGCAGAACTGTGTCACGGAGCTTGCTTCCCACCCAAGTCGAGAGAAGCCCTTTGAAGACTTCCTCCCATCGCATTATAATTATCTGCAGTTTGCCTACTATAACATTGGGAATTACACACAGGCCATTGAATGTGCCAMGACCTATCTCCTCTTCTTCCCCAATGATGAGGTGATGAGCCAGAATCTGGCCTACTATACAGCCATGCTTGGAGAAGAACAAGCCAGATCCATCGGTCCCCGTGAGAGTGCCCAGGAGTACCACCAGCGAAGCCTGCTGGAGAAAGAACTGCTCTTCTTCGCTTATGATGTTTTCGGAATTCCCTTTGTTGACCCGGATTCATGGACTCCAGAAGAGGTGATTCCCAAGAGACTGCAAGAGAAACAGAAGTGA

Related Sequences

bmy_17904T0 Protein

Length: 409 aa      View alignments
>bmy_17904T0
MAARSLRLLTTLLAVATAACRSEAESEAEWDMTAPDLLFAEGAAAYARGDWAGVVLSMERALRSRAALRALRLRCRTRCAADLPWELDPDSPPSLAPASGAAALHDLRFFGGLLRRAACLRRCLGPSATHPLSEELELEFSKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEADFKDLEAKPHMHEFRLGVRLYSEEQLQEAAPHLETALREYFVADEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLSCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAIECAXTYLLFFPNDEVMSQNLAYYTAMLGEEQARSIGPRESAQEYHQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQK*