Part of scaffold_1614 (Scaffold)

For more information consult the page for scaffold_1614 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VBP1 ENSTTRG00000016258 (Bottlenosed dolphin)

Gene Details

von Hippel-Lindau binding protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015412, Bottlenosed dolphin)

Protein Percentage 97.65%
cDNA percentage 98.63%
Ka/Ks Ratio 0.53935 (Ka = 0.0113, Ks = 0.0209)

BT.20583 ENSBTAG00000017265 (Cow)

Gene Details

prefoldin subunit 3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022946, Cow)

Protein Percentage 95.29%
cDNA percentage 94.12%
Ka/Ks Ratio 0.12972 (Ka = 0.0243, Ks = 0.1875)

VBP1  (Minke Whale)

Gene Details

von Hippel-Lindau binding protein 1

External Links

Gene match (Identifier: BACU010890, Minke Whale)

Protein Percentage 88.55%
cDNA percentage 89.82%
Ka/Ks Ratio 0.43592 (Ka = 0.0895, Ks = 0.2052)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 513 bp    Location:399496..420757   Strand:+
>bmy_17932
ATGGCGGCCGGTAAGGACGATTGTGGTTTGGGAGAAGTGGCCGGAGGGAACGGGCGGCGGCTCCACCTGGGGATTCCTGAGGCCGTTTTCGTGGAAGATGTAGATTCCTTCATGAAACAGCCTGGGAATGAGACTGCAGATACAGTACTGAAGAAGCTGGATGAACAGTACCAGAAGCTAAAAGGTCAGATTCCTGAAATTAAGCAGACTTTAGAAATTCTAAAGTACATGCAGAAGAAAAAAGAGTCCACCAATTCACTGGAGACCAGGTTCTTACTGGCAGATAACCTGTATTGCAAAGCTTCAGTTCCTCCTACTGATAAAGTGTGTCTGTGGTTGGGGGCGTTGTTGGAAAAGAATTTATCGACTGCCACAAAGAATCTTGATTCTCTTGAGGAAGACCTCGACTTTCTTCGAGATCAATTTACTACCACAGAAGTCAATATGGCCAGGGTTTATAATTGGGATGTAAAAAGAAGAAACAAAGATGATCCTACCAAGAACAAAGCATAA

Related Sequences

bmy_17932T0 Protein

Length: 171 aa      View alignments
>bmy_17932T0
MAAGKDDCGLGEVAGGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKLKGQIPEIKQTLEILKYMQKKKESTNSLETRFLLADNLYCKASVPPTDKVCLWLGALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRRNKDDPTKNKA*