Part of scaffold_1676 (Scaffold)

For more information consult the page for scaffold_1676 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CDHR1 ENSTTRG00000015069 (Bottlenosed dolphin)

Gene Details

cadherin-related family member 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014285, Bottlenosed dolphin)

Protein Percentage 78.79%
cDNA percentage 83.4%
Ka/Ks Ratio 0.48264 (Ka = 0.141, Ks = 0.2921)

BT.97285 ENSBTAG00000001231 (Cow)

Gene Details

cadherin-related family member 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000001628, Cow)

Protein Percentage 80.0%
cDNA percentage 83.7%
Ka/Ks Ratio 0.30591 (Ka = 0.134, Ks = 0.438)

CDHR1  (Minke Whale)

Gene Details

cadherin-related family member 1

External Links

Gene match (Identifier: BACU005467, Minke Whale)

Protein Percentage 86.38%
cDNA percentage 90.38%
Ka/Ks Ratio 0.60534 (Ka = 0.0931, Ks = 0.1538)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2403 bp    Location:170874..132324   Strand:-
>bmy_17955
ATGAGGTTTCTAGCCCTCGCCAGCCTACTCTGCATCTTGCTTCTCTGCTTGTCCGTCTTCTCCGCAGAAGGGAGAAGGCATCCGAGGCATCCTGCCAAGCCCGGGAAAAGCAAGCCCTGCTGTCCCCGAGTTCCTGGCCCTGACCTGATGACCCGGAAAGCCCAGGCCAACTTCGCCCCCTACTTTTTCGACAACGGGGTGGGCAGCACCAACGGAAACATGGCCCTCTTCAGCCTCCCGGAGGACACTCCTGTGGGCTCTCATGTGTACACCCTGAATGGAACAGACCCTGAGGGAGACCCCATCTCCTACCACATCAGCTTTGACCCCAGCGCTAGAAGCATCTTTTCGGTTGACCCCAATTTTGGAAACATAACCCTGATTGAAGAGCTGGACAGAGAGAGGGAGGATGAGATTGAAGCCATTATCAGCATTTCCGACGGCCTGAATCTGGTGGCGGAAAAAGTCACTATCCTGGTGACTGATGCCAATGACGAGGCACCCAGGTTCATCCAGGAGCCCTACGTTGTCCAGGTTCCCGAGGACACACCTGCCGGGAGCAGTATCGCCAAGGTCCATGCAGTGGACAGGGACACAGGTTCTGGAGGGAGTGTCATCTACTTCCTGAAGGTAAGGAAGGACGGTGAAGACCCCCGTTCAGGAAGCAGAGCAGGCGATCCTGGGGCCACCCGGGTCCCTCCCCAAGGCCCAGCCTGCCCCTCGCTCTTACAGAATCCACACTCCACCAAGTTTTCTGTGGACCGCCACAGTGGTGTCCTGCGCCTCCAGGCTGGGGCCACCCTGGACTACGAGAAGACCCGGGCCCACTTCATTGCTGTGGTTGCCAAGGTAACAGAGAGGGAGGAGTGGCAGCATCTGGGCTCTCCTCAGCCTCCGTCAGGGGAAGCTGCCCTTGGATTGGAGCAGCTAGGTTCTACAATTGGGGGGCAGCTCGGGGCAGAAGCTGCCCAGRCCATGGCCCCTGTCACCATCCGGATCGTGGACCTCAACAACCATCCACCGACATTCTATGGAGAGAGTGGACCCCAGAACAGATTTGAGCTGTCCATGTATGAGCACCCGCCCCAGGGGGAGATCCTGCGGGGCCTCAAGATCACTGTCAATGACTCAGACCAGGGAGCCAATGCCAAATTCAACCTGCGGCTGGTGGGACCCGGGGGCATCTTCCGAGTGGTCCCCCAGACAGTCCTGAATGAAGCCCAAGTCACGATCATTGTAGAGAACTCAGCCACCATTGACTTTGAAAAGTTCAAAGTGTTAACCTTCAAGGCTGTCGATCCAGACACAGGTCCCTGGGGTGAAGTCAAATACTCCATCTATGGATCCGGGGCAGACCTCTTCCTGATCCACCCATCCTCTGGGATCATCTACACCCAACCCTGGGCCAACCTGGACGCCGAGGACACTGCCAGGTACAACTTCTATGTGAAGGCGGAGGACATGGAGGGCAGGTACAGCCTAGCCGAGGTGTTCGTCACGCTGCTGGATGTCAATGACCACTACCCCCAGTTTGGAAAGAGCGTCCAGGAGAAGACAATGGTGCTGGGGACCCCAGTGAAAATTGAGGCCACAGACCAGGACGCAGAGGAGCCCAACAACCTGGTGGACTATTCCATCACCCACGCAGAGCCAGCCAACGTGTTCGACATCGATACACACACGGGGGAGATCCGGCTCAAGAACTCCATCCGCTCCCTGGATGCCCTGCACAACATCACACCCAGCGGGGACCACACGTGGTCCCTAGAGGTGCAGGCCAAGGACCGCGGCTCCCCATCCTTCAGCACCACGGCCTTACTCAAGATTGATATCGTAGACACTGAGATGCTGTCCCGAAACCCCATGGCTGCCTTCCTGATGCAGACCAAAGACAACCCCATGAAGGCCGTGGGTGTGCTGGCCGGCATCATGGCCATCATTGTGGCCATAACCGTCCTCATCTCCACCGCCACCTTCTGGCGCAACAAGAAGTCCAGCAAGGTCCTGCCGGTGCGGCGTGTGCTCCGCAAGCGGCCCAACCCTGCACCCCGCACCGTCCGCATCGAGTGGCTCAAGTTCAGAAGGACCAAGGCCGTTGACAAGTTTGTGCTCAGAGAGGATCCTCCCAATGAGAACTGCAACAACAACAGCCTGGGGAGCGCACCGCCCCCCAAAGCCCCCGCTCCCCCTCCACCACCCAGCATGGCACCCAGCATGGGACCAGCCCACTGGATGGTGCCTACAGTCTCTGGCTCACTCGCCCCTCAGCAACCCCATCCATCACCAAAACCCAAGGCCTTGGCAAAACCCAAGGCTGCGGGAAGACCCGTCCAGTCAGCTCTGGTCTCTGAGCTCAGGCAAAAGTTTGAGAAGAAGAATGTGCATAACAAGGCTTACTTCTAG

Related Sequences

bmy_17955T0 Protein

Length: 801 aa      View alignments
>bmy_17955T0
MRFLALASLLCILLLCLSVFSAEGRRHPRHPAKPGKSKPCCPRVPGPDLMTRKAQANFAPYFFDNGVGSTNGNMALFSLPEDTPVGSHVYTLNGTDPEGDPISYHISFDPSARSIFSVDPNFGNITLIEELDREREDEIEAIISISDGLNLVAEKVTILVTDANDEAPRFIQEPYVVQVPEDTPAGSSIAKVHAVDRDTGSGGSVIYFLKVRKDGEDPRSGSRAGDPGATRVPPQGPACPSLLQNPHSTKFSVDRHSGVLRLQAGATLDYEKTRAHFIAVVAKVTEREEWQHLGSPQPPSGEAALGLEQLGSTIGGQLGAEAAQXMAPVTIRIVDLNNHPPTFYGESGPQNRFELSMYEHPPQGEILRGLKITVNDSDQGANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSATIDFEKFKVLTFKAVDPDTGPWGEVKYSIYGSGADLFLIHPSSGIIYTQPWANLDAEDTARYNFYVKAEDMEGRYSLAEVFVTLLDVNDHYPQFGKSVQEKTMVLGTPVKIEATDQDAEEPNNLVDYSITHAEPANVFDIDTHTGEIRLKNSIRSLDALHNITPSGDHTWSLEVQAKDRGSPSFSTTALLKIDIVDTEMLSRNPMAAFLMQTKDNPMKAVGVLAGIMAIIVAITVLISTATFWRNKKSSKVLPVRRVLRKRPNPAPRTVRIEWLKFRRTKAVDKFVLREDPPNENCNNNSLGSAPPPKAPAPPPPPSMAPSMGPAHWMVPTVSGSLAPQQPHPSPKPKALAKPKAAGRPVQSALVSELRQKFEKKNVHNKAYF*