Part of scaffold_1658 (Scaffold)

For more information consult the page for scaffold_1658 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IRBP ENSTTRG00000013423 (Bottlenosed dolphin)

Gene Details

Interphotoreceptor retinoid binding protein

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012733, Bottlenosed dolphin)

Protein Percentage 97.99%
cDNA percentage 97.35%
Ka/Ks Ratio 0.07852 (Ka = 0.007, Ks = 0.0894)

BT.56277 ENSBTAG00000005003 (Cow)

Gene Details

retinol-binding protein 3 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006585, Cow)

Protein Percentage 91.45%
cDNA percentage 91.16%
Ka/Ks Ratio 0.1256 (Ka = 0.0429, Ks = 0.3414)

RBP3  (Minke Whale)

Gene Details

retinol binding protein 3, interstitial

External Links

Gene match (Identifier: BACU007617, Minke Whale)

Protein Percentage 97.98%
cDNA percentage 97.87%
Ka/Ks Ratio 0.17629 (Ka = 0.011, Ks = 0.0621)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3861 bp    Location:407249..418800   Strand:+
>bmy_18063
ATGTCAAGAAAATGGGCCCTGCTCTTGCCCATGCTGCTCTGCAGCCTGGCTGGCCCTACACACCTATTCCAGCAGAGCCTGGTGCTGGACATGGCCAAGGTCCTCTTGGATAACTACTGCTTCCCAGAGAACCTGATGGGGATGCAGGAAGCCATCGAGCAGGCCATCAAGAGTCATGAGATCCTGGCCATTTCAGACCCTGAGACTCTGGCCCATGTGCTGACAGCTGGCGTGCAGAGCTCCTTGAACGACCCTCGYCTGGTCATCTCCTATGAGCCCAGCACCCTCGAGGCTCCCCGGCAAGCCCCAGCACTCATGAACCTCACGCTAGAGGAACTCATTGCGGGGCTGCAGAACGGCCTCCGCCATGAGGTTCTGGAAGGCAATGTGGGCTACCTGCGGGTGGACGACATCCCGGGCCAGGAGGTGATGAGCAAGCTGAGGAGCTTCCTGGTGGCCAACGTCTGGAGGAAGCTCATGGGCACCTCCGCCTTGGTGCTGGACCTCCGCCACTGCACTGGGGGCCACATTTCCGGCATCCCCTATGTCATCTCCTACCTGCACCCAGGGAACACAGTCCTGCACGTGGACACCATCTATGATCGCCCCTCTAATACGACCACTGAGATCTGGACCCTGCCCGAAGTCCTAGGAGAGAACTACGGTGCCGATAAGGATGTGGTGGTCCTCACCAGTGGTCGCACCGGGGGTGTGGCTGAGGACATCGCTTATATCCTCAAACAAATGCGCAGGGCCATTGTGGTGGGCGAGCGGACTGTGGGGGGGGCCTTGGACCTCCAGAAGCTGCGGATAGGCCAGTCTGACTTCTTTCTCACCGTGCCCGTGTCCAGGTCCCTGGGGCCCCTGGGCAAGGGCAGCCAGACTTGGGAGGGCAGCGGGGTGCTGCCTTGTGTGGGGACACCGGCCGAGCAGGCCCTGGAGAAGGCCCTGGCCATCCTCACGCTGCGCCGCGCCCTGCCGGGAGTCATCCAGCGCCTGCAGGAGGCCCTGCGGGAATACTACACACTGGTGGACCGCGTGCCTGCCCTGCTGCACCACCTGGCCAACATGGACCTGTCCTCGGTGGTCTCCGAGGAGGATCTGGTCACTAACCTCAACACCGGCCTGCAGGCCGTGTCCGAGGACCCCAGGCTCCTGGTGCAGGTGGTCAGGTCCAAAGAAACCTCTTCTGGGCCCGAGGATGAAGCTGAAGAACCCTCGGAGATGGTCTCAGAAGTGCCCGAGGACGAGGCTGCCCGGCGGGCCCTGGTGGACTCCGTGTTCCAGGTGTCCGTGCTGCCGGGCAACGTGGGCTACCTGCGCTTTGACAGGTTTGCCGACGCCTCAGTGCTGGGGGTGCTGGCCCCGTACATCCTGCGCCAGGTGTGGGAGCCCCTGCAGGACACGGAGCACCTCATCATGGACCTGCGGCAGAACCCTGGGGGGCCGTCCTCTGCCGTGCCCCTGCTGCTCTCCTATTTCCAGGGACCCGACTCCGGCCCCGTGCGTCTCTTCACCACCTACGACCGGCGCACCAATGTCACGCAGGAGCACTTCAGCCAGACCGAGCTGCTGGGCCAGCCATACGGCACCCAGCGCGGGGTGTACCTGCTCACCAGCCACCGCACCGCCACCGCAGCCGAGGAGCTGGCCTTCCTCATGCAGTCGCTCGGCTGGGCCACGCTGGTGGGCGAGATCACGGCGGGCAGCCTGCTGCACACGCACACGGTGCCCCTGCTGGAGACGCCCGAGGGCGGCCTGGCGCTCACGGTGCCCGTGCTCACCTTCATCGACAACCATGGCGAGTGCTGGCTGGGGGGCGGCGTGGTCCCCGATGCCATCGTGCTGGCTGAGGAAGCCCTGGACAGAGCCCAGGAGGTGCTGGAGTTCCACCGAAGCCTGGGGGAGCTGGTGGAGGGCACGGGGCACCTGCTGGAGGCCCACTATGCCCGGCCAGAGGTCGTGGGGCAGACAGGCGCCGTGTTGCAAGCCAAGCTGGCCCAGGGCGCCTACCGCACAGCAGTGGACCTGGAGTCGCTGGCCTCCCAGCTCACGGCAGACCTGCAGGAGATGTCTGGAGACCACCGTCTGCTGGTGTTCCACAGCCCCGGCGAGATGGTGGCTGAGGAAGTGCCCCTACCACCTCCCATCGTCCCCTCCCCAGAGGAGCTCTCCTACCTCATCGAGGCCCTGTTCAAGACAGAGCTGCTGCCRGGCCGGCTGGGCTACCTGCGTTTCGACGCCATGGCTGAGCTGGAGACGGTGAAAGCCATCGGGCCACAGCTGGTACAGCTGGTATGGCAGAAGCTGGTAGACACACCCGCGCTGGTGGTCGACCTGCGCTACAACCCCGGCAGCTACTCCACGGCCGTGCCGCTGCTCTGTTCCTACTTCTTCGAGGCAGAGCCCCGCCAGCACCTCTACTCCGTCTTTGACAGGGCCATGTCGAGAGTCACAGAGGTGTGGACCCTGCCCCAGGTGGCAGGCCAGCGCTACGGCTCCCACAAGGACCTCTACATCCTGGTGAGCCACACCAGTGGGTCGGCGGCTGAAGCTTTCGCTCACACCATGCAGGACCTGCAGCGTGCCACCATCATCGGGGAGCCCACGGCTGGAGGGGCGCTCTCCGTGGGCATCTACCAGGTGGGCAGCAGCCCCTTATATGCCTCCATGCCCACGCAGATGGCCCTGAGTGCCAGCACCGGTGAGGCCTGGGACCTGGCTGGGGTGGAGCCAGACATCACCGTGCCCATGAGTGTGGCCCTCTCCACAGCCCAGGACATAGTGGCCCTGCGTGCCAAGGTGCCCACTGTGCTGCAGACAGCTGGGAAGCTCGTAGCAGATAACTATGCCTCCCCCGAGCTGGGAGCCAAGATGGCATCCAAACTGAGCCGTCTGCAGAGCCGCTATGCCAGGGTGACATCAGAAGCTGCCCTGGCCGAGATGCTGGAGGCTGACCTGCAGGTGCTGTCCGGGGACCCACACCTGAAGACAGCCCATATCCCTGAGGATGCCAAGGACCGCATTCCTGGCATTGTACCCATGCAGATCCCTTCCCCTGAAGTCTTTGAAGACCTGATCAAGTTTTCCTTCCACACTAATGTGCTTGAGGGCAACGTTGGCTACTTGAGGTTTGATATGTTTGGAGACTGTGAGCTGCTCACCCAGGTCTCCGAGCTGCTGGTGGAGCATGTCTGGAAGAAGATTGTACACACAGACGCCCTGATTGTCGACATGAGGTTCAACATCGGTGGTCCCACCTCCTCCATCTCCGCCATATGTTCCTACTTTTTCGACGAAGGCCCACCTATTCTGCTGGACAAAATCTACAACCGGCCCAATGACTCTGTCAGCGAGCTCTGGACCCACGCGCAGCTCGAAGGTGAACGCTACGGCTCCAAGAAGAGTATGGTCATTCTGACCAGCAGTTTGACAGCTGGCGCCGCAGAGGAATTTACCTACATCTTGAAGAGGCTGGGCCGGGCACTGGTCATCGGGGAGGTGACCAGTGGGGGCTGCCAGCTGCCGCAAACCTACCACGTGGATGACACCGACCTGTACATCACCATCCCCACTGCCCGCTCAGTGGGGGCTGCAGACGGCAGCTCCTGGGAAGGGGTGGGCGTGGTGCCTGACGTGGCTGCCCCTGCAGAAGCAGCCCTCGCCAGAGCCAAGGAGGTGCTCCAGCACACTCTGCTAAGGGCGAGGCGGAGCCCACGCCTGCACGGCCGCCGCAAGGGCCACCGTAGTCAGAGCCATAAAAGGGCGGGACCTCTGGGACACATCCAAGGGACACCCAGGCATGAGGTCCTGACTGAGGCCCCCAAAGGGCAGAAAACGGGCCTGCTGCCCTCTGGTTAG

Related Sequences

bmy_18063T0 Protein

Length: 1287 aa      View alignments
>bmy_18063T0
MSRKWALLLPMLLCSLAGPTHLFQQSLVLDMAKVLLDNYCFPENLMGMQEAIEQAIKSHEILAISDPETLAHVLTAGVQSSLNDPRLVISYEPSTLEAPRQAPALMNLTLEELIAGLQNGLRHEVLEGNVGYLRVDDIPGQEVMSKLRSFLVANVWRKLMGTSALVLDLRHCTGGHISGIPYVISYLHPGNTVLHVDTIYDRPSNTTTEIWTLPEVLGENYGADKDVVVLTSGRTGGVAEDIAYILKQMRRAIVVGERTVGGALDLQKLRIGQSDFFLTVPVSRSLGPLGKGSQTWEGSGVLPCVGTPAEQALEKALAILTLRRALPGVIQRLQEALREYYTLVDRVPALLHHLANMDLSSVVSEEDLVTNLNTGLQAVSEDPRLLVQVVRSKETSSGPEDEAEEPSEMVSEVPEDEAARRALVDSVFQVSVLPGNVGYLRFDRFADASVLGVLAPYILRQVWEPLQDTEHLIMDLRQNPGGPSSAVPLLLSYFQGPDSGPVRLFTTYDRRTNVTQEHFSQTELLGQPYGTQRGVYLLTSHRTATAAEELAFLMQSLGWATLVGEITAGSLLHTHTVPLLETPEGGLALTVPVLTFIDNHGECWLGGGVVPDAIVLAEEALDRAQEVLEFHRSLGELVEGTGHLLEAHYARPEVVGQTGAVLQAKLAQGAYRTAVDLESLASQLTADLQEMSGDHRLLVFHSPGEMVAEEVPLPPPIVPSPEELSYLIEALFKTELLPGRLGYLRFDAMAELETVKAIGPQLVQLVWQKLVDTPALVVDLRYNPGSYSTAVPLLCSYFFEAEPRQHLYSVFDRAMSRVTEVWTLPQVAGQRYGSHKDLYILVSHTSGSAAEAFAHTMQDLQRATIIGEPTAGGALSVGIYQVGSSPLYASMPTQMALSASTGEAWDLAGVEPDITVPMSVALSTAQDIVALRAKVPTVLQTAGKLVADNYASPELGAKMASKLSRLQSRYARVTSEAALAEMLEADLQVLSGDPHLKTAHIPEDAKDRIPGIVPMQIPSPEVFEDLIKFSFHTNVLEGNVGYLRFDMFGDCELLTQVSELLVEHVWKKIVHTDALIVDMRFNIGGPTSSISAICSYFFDEGPPILLDKIYNRPNDSVSELWTHAQLEGERYGSKKSMVILTSSLTAGAAEEFTYILKRLGRALVIGEVTSGGCQLPQTYHVDDTDLYITIPTARSVGAADGSSWEGVGVVPDVAAPAEAALARAKEVLQHTLLRARRSPRLHGRRKGHRSQSHKRAGPLGHIQGTPRHEVLTEAPKGQKTGLLPSG*