Sequence detailsbmy_18088 (Coding sequence)

Part of scaffold_1642 (SequenceType object (1))

For more information consult the page for scaffold_1642 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

EIF3FENSTTRG00000016586 (Bottlenosed dolphin)

Gene Details

eukaryotic translation initiation factor 3, subunit F

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000015723, Bottlenosed dolphin)

Protein Percentage 98.87%
cDNA percentage 98.31%
Ka/Ks Ratio 0.10692 (Ka = 0.0053, Ks = 0.0496)

EIF3FENSBTAG00000004861 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000046146, Cow)

Protein Percentage 97.52%
cDNA percentage 94.67%
Ka/Ks Ratio 0.07085 (Ka = 0.0131, Ks = 0.1848)

EIF3F (Minke Whale)

Gene Details

eukaryotic translation initiation factor 3, subunit F

External Links

Gene match (Identifier: BACU004471, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.52%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0218)

Additional orthologs identified in other species via the OPTIC pipeline.

EIF3F (Human)   Eif3f (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1092 bp    Location:448231..440791   Strand:-
Raw sequence 
>bmy_18088
ATGGCCACGCCGGCAGTACCGCCGAGCGCGCCTCCCGCCACCCCAACCGAAACCCCGGCTGCGGCCTCAGACCCGGCCCCGGCTCCAGCCCCAGCCTCAGCCTCAGCGCCGGCTCCAGCGCCGGTTCCAGCTCCAACGCCGGCTCCAGCCTCATCCTCAGACCCGGCGGCAGCAGCGGCTACGACCGCGGCTCCGGGCCAGACCCCGGCCTCAGCGCCAGCCCCAGCGCAGACCCCGGCACAGTCGCTGCCTGGCCCGGCTCTCCCAGGCCCCTTCCCTGGCGGCCGCGTGGTCCGGCTGCACCCGGTCATTTTGGCCTCCATCGTGGACAGCTACGAGCGACGCAACGAGGGCGCTGCCCGAGTCATCGGGACCCTGCTGGGAACCGTTGACAAGCACTCAGTGGAAGTCACCAACTGCTTTTCAGTGCCGCACAATGAGTCAGAAGACGAGGTGGCTGTTGACATGGAATTTGCTAAGAACATGTATGAATTGCACAAGAAAGTCTCTCCAAATGAGCTCATCCTGGGCTGGTATGCTACAGGCCATGACATCACAGAGCACTCAGTGCTGATCCATGAGTACTACAGCCGGGAAGCCCCCAACCCCATTCACCTCACAGTGGACACGAGCCTCCAGAACGGCCGCATGAGCATTAAGGCCTACGTCAGCACTTTAATGGGTGTTCCTGGGAGGACCATGGGGGTGATGTTCACCCCTCTGACAGTGAAATACGCATATTATGACACTGAACGCATTGGAGTTGACCTGATCATGAAGACGTGTTTTAGCCCCAACCGGGTAATCGGCCTCTCCAGTGACTTGCAGCAAGTGGGAGGGGCATCGGCCCGCATCCAGGATGCCCTCAGCACAGTGTTGCAGTACGCGGAGGACGTGCTGTCTGGAAAGGTGTCAGCTGACAATACCGTGGGCCGCTTCTTGATGAGTCTGGTTAACCAAGTACCCAAAATAGTTCCTGAGGACTTCGAGACCATGCTCAACAGCAACATCAACGACCTGCTGATGGTGACCTACCTGGCCAATCTCACGCAGTCACAAATTGCCCTCAATGAGAAACTTGTGAACCTGTGA

Related Sequences

bmy_18088T0 SequenceType object (3)

Length: 364 aa      View alignments
>bmy_18088T0
MATPAVPPSAPPATPTETPAAASDPAPAPAPASASAPAPAPVPAPTPAPASSSDPAAAAATTAAPGQTPASAPAPAQTPAQSLPGPALPGPFPGGRVVRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPEDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL*