Sequence detailsbmy_18132 (Coding sequence)

Part of scaffold_1683 (SequenceType object (1))

For more information consult the page for scaffold_1683 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEC23AENSTTRG00000017123 (Bottlenosed dolphin)

Gene Details

Sec23 homolog A (S. cerevisiae)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000016231, Bottlenosed dolphin)

Protein Percentage 78.62%
cDNA percentage 81.6%
Ka/Ks Ratio 0.62649 (Ka = 0.1484, Ks = 0.2369)

BT.69980ENSBTAG00000003708 (Cow)

Gene Details

Protein transport protein Sec23A

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000004831, Cow)

Protein Percentage 97.96%
cDNA percentage 94.57%
Ka/Ks Ratio 0.06063 (Ka = 0.0134, Ks = 0.2213)

SEC23A (Minke Whale)

Gene Details

Sec23 homolog A (S. cerevisiae)

External Links

Gene match (Identifier: BACU007381, Minke Whale)

Protein Percentage 82.6%
cDNA percentage 86.1%
Ka/Ks Ratio 0.54159 (Ka = 0.1341, Ks = 0.2475)

Additional orthologs identified in other species via the OPTIC pipeline.

SEC23A (Human)   Sec23a (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1917 bp    Location:97932..34507   Strand:-
Raw sequence 
>bmy_18132
ATGACAACCTATTTGGAATTCATCCAACAAAATGAAGAACGAGATGGAGTCCGATTTAGTTGGAATGTTTGGCCATCAAGTCGACTGGAAGCTACAAGAATGGTCGTTCCAGTAGCAGCCTTATTTACACCACTGAAGGAGAGACCAGATTTGCCACCCATTCAATATGAACCTGTTCTGTGTAGTAGGACCACTTGCCGTGCAGTTTTGAATCCTTTATGTCAAGTGGATTATCGAGCAAAACTCTGGGCTTGCAACTTTTGTTATCAAAGAAATCAGTTTCCACCTACTTATGCTGGTATATCTGAACTGAATCAACCTGCTGAACTTTTACCTCAGTTTTCTAGCATTGAATATGTAGTTCTGATATACATTTCCATACGATTCTTGCAGCCAGTACAGAAAATAGACATGAATCTCACAGATCTTCTGGGAGAACTGCAGCGAGACCCGTGGCCTGTACCACAGGGAAGGAGACCTTTGCGTTCCTCTGGGGTGGCACTTTCCATAGCCGTAGGACTACTTGAGTGTACTTTTCCCAACACTGGTGCTCGTATTATGATGTTCATTGGTGGTCCAGCCACTCAGGGGCCTGGAATGGTGGTTGGAGATGAATTGAAGACACCCATAAGATCATGGCATGACATTGAAAAAGACAATGCCAAATATGTTAAAAAGGGAACTAAGCATTTTGAAGCATTGGCTAATCGCGCTGCTACGACTGGTCATGTTATTGATATCTATGCATGTGCATTAGATCAGACAGGTCTCCTGGAGATGAAATGCTGTCCTAACCTTACTGGAGGATACATGGTAATGGGTGACTCTTTCAACACTTCCTTATTCAAGCAAACTTTTCAAAGAGTTTTTACCAAAGATATGCATGGACAGTTTAAAATGGGCTTTGGTGGTACATTAGAAATAAAGGAGATAGGAACAGGTGGTACTTGCCAATGGAAGATATGTGGACTCAGTCCCACTACAACCTTAGCCGTATATTTTGAAGTTGTCAATCAGCATAATGCTCCAATTCCTCAAGGAGGACGTGGTGCAATCCAGTTTGTGACTCAGTATCAGCATTCAAGTGGGCAGAGACGTATCCGAGTGACCACCATTGCTAGGAACTGGGCAGATGCTCAAACTCAAATCCAAAACATTGCTGCATCTTTTGACCAGGAGGCAGCTGCCATTCTTATGGCTCGGCTGGCAATATATAGAGCAGAAACAGAAGAAGGTCCAGATGTGCTTAGATGGCTAGACAGACAGCTCATTCGACTGTGTCAGAAATTTGGAGAGTATCACAAAGATGATCCAAGTTCCTTCAGATTTTCAGAAACTTTCTCCCTTTATCCACAGTTTATGTTTCATTTAAGAAGATCTCCTTTCTTGCAAGTTTTTAACAATAGTCCTGACGAGAGTTCATATTATCGTCACCATTTTATGCGTCAAGATTTGACCCAGTCTCTAATCATGATTCAGCCTATTCTGTATGCATATTCTTTTAGTGGACCACCAGAGCCGGTTCTTCTTGATAGCAGCAGCATTCTTGCAGATCGTATTCTCCTCATGGACACATTTTTCCAGATTTTGATTTATCATGGTGAGACCATAGCTCAGTGGCGTAAGTCGGGATACCAGGACATGCCAGAATATGAAAATTTCCGCCACCTTCTGCAAGCCCCAGTGGATGATGCACAGGAGATCCTTCACTCCAGATTTCCAATGCCGAGATACATTGACACTGAACATGGGGGCAGTCAGGCGCGTTTCCTGCTTTCGAAAGTCAACCCTTCACAGACTCATAATAATATGTATGCCTGGGGACAGGAGTCTGGAGCACCTATTCTCACAGATGATGTTAGTTTACAAGTGTTTATGGATCACTTAAAGAAACTTGCTGTGTCAAGTGCTGCTTGA

Related Sequences

bmy_18132T0 SequenceType object (3)

Length: 639 aa      View alignments
>bmy_18132T0
MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLIYISIRFLQPVQKIDMNLTDLLGELQRDPWPVPQGRRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKEIGTGGTCQWKICGLSPTTTLAVYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA*