Sequence detailsbmy_18220 (Coding sequence)

Part of scaffold_1705 (SequenceType object (1))

For more information consult the page for scaffold_1705 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TNRC6AENSTTRG00000002008 (Bottlenosed dolphin)

Gene Details

trinucleotide repeat containing 6A

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000001884, Bottlenosed dolphin)

Protein Percentage 89.29%
cDNA percentage 89.27%
Ka/Ks Ratio 0.22891 (Ka = 0.0085, Ks = 0.037)

TNRC6AENSBTAG00000017999 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000055965, Cow)

Protein Percentage 96.62%
cDNA percentage 95.92%
Ka/Ks Ratio 0.14597 (Ka = 0.0167, Ks = 0.1141)

Additional orthologs identified in other species via the OPTIC pipeline.

TNRC6A (Human)   Tnrc6a (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 4002 bp    Location:391211..371574   Strand:-
Raw sequence 
>bmy_18220
ATAAACCACAATACTTCAGGATCCCATTATGAAAATTCGCAGCGGGGACCTGTGTCTTCTACAAGTGACTCTAGCACAAACTGTAAGAATGCTGTTGTAAACGACTCGCCTGAAACAGAAGCATGGCCCTCAGTCCCTGGCAGTRACCCAGAGTTGGCCTCAGCATGTGTGGATGCTGATTCTGCCTCCAGTTCTGAATCAGAGAGAAACGTCACTATCATGGCTTCAGGGAGCACAGGTGGTGAAAATGATGGCCTTCGGAATAGCACTGGACTTGGATCCCAAAACAAGTTTGTGGTTGGTAGCAGCAGCAATAATGTGGGCCATGGAAGTAGTACTGGGCCATGGGGTTTTTCCCATGGAGCCATAATAAGCACATGTCAGGTCTCTGTGGATGCTCCTGAAAGCAAATCAGAAAGTAGCAACAATAGAATGAATGCTTGGGGCACTGTAAGTTCTTCATCAAATGGAGGGTTAAATCCAAGCACTTTGAATTCAGCTAGCAACCATGGTGCCTGGCCAGTGTTAGAGAACAACGGACTTGCCCTAAAAGGGCCTGTAGGGAGTGGTAGTTCTGGCATCAATATTCAGTGCAGTACCTTAGGCCAGATGCCTAACAATCAGAGTATTAACTCTAAAGTGGGTGGTTCTTCTACCCATGGTACCTGGGGAAGCCTTCAGGAAACTTGTGAATCTGAAGTAAGTGGTACACAGAAGGTTTCATTCAGTGGTCAACCTCAAAATATTACCACTGAAATGACTGGACCAAATAACACTACTAACTTTGTGACCTCTAGTTTACCAAACTCCGGTTCAGTACAGAATAACGAACTGCCTAGTAATACAGGGGCCTGGCGTGTGAGCACAATGAATCATCCTCAGATACAGGCTCCGTCGGTTGTAAATGGCACTTCCCTTTCTCACCTTAGCAATGGAGAGTCAAAAAGTGGAGGCTCTTACGGTACTACATGGGGTGCCTATGGTTCTAATTACTCTGGAGACAAATGTTCAAGCCCTAATGGCCAAGCTAATGGTGACACTGTGAATGCAACTCTAATGCAGCCTGGCATAAACGGGCCTATGGGCACTAACTTTCAAGTTAACACAAATAAAGGAGGAGGTGTGTGGGAGTCTGGGGCAGTGAATTCCCAGAGTGCATCATGGGGAAATGGTGCAAATTCTGGAGGAAGTCGAAGAGGATGGGGAACTCCTGCACAAAACACTGGCACTAATACACCCAGCGTGGAATGGAGCAAACTGCCTAGCAATCAGCATTCCAGTGACAGTGCAAATGGCAATGGTAAGAAGTTTACAAACGGATGGAAGTCTACTGAGGAAGAGGATCAGGGTTCTGCCACATCTCAGACAAATGAGCAAAACAGTGTGTGGGCCAAAACGGGAGGTACAGTGGAGAGTGAAGGTAGTACAGAAAGCACTGGACGCCTTGAGGAAAAAGTAACTGGGGAAAATCAGAGTAGAGATAGACGAAAAATCGATCAGCACACATTACTCCAAAGCATTGTAAACAGAACTGACTTAGATCCACGTGTCCTATCCAACTCTGGTTGGGGACAGACTCCTATTAAGCAAAATACTGCCTGGGATACCGAAACATCACCTAGAGGGGAAAGAAAGACTGACAATGGGACAGAGGCCTGGGGAAGCTCTGCAACACAGACTTTTAACTCAGGGGCATGTACAGATAAGACTAGCCCTAGTAGTAATGATACCTCATCTGTATCGGGGTGGGGAGATCCCAAACCTACTCTGAGGTGGGGAGATTCCAAAGGCTCAAACTGCCAGGGGGGATGGGAAGATGATTCTGCTGCTACAGGAATGGCCAAGAGCAATCAGTGGGGGAATTGCAAAGAAGAGAAGTCTGCATGGAATGATTCGCAAAAGAACAAACAGGGATGGGGTGATGGACAAAAATCAAACCAAGGTTGGTCCGTTTCTGCCAGTGATAACTGGGGAGAAACTTCAAGGAGTAACCATTGGGGTGAGGCTAATAAGAAATCTAGCTCAGGAGGTAGTGACAGTGATAGGTCCGTTTCTGGTTGGAACGAACTTGGTAAAACTAGTTCTTTTACTTGGGGAAATAACATAAATCCAAATAATTCATCAGGATGGGATGAATCTTCTAAACCGAATCCTTCCCAGGGATGGGGAGATCCTCCAAAGTCTAATCAGTCTCTAGGTTGGGGAGATTCGTCAAAGCCAGTCAGTTCTCCAGACTGGAACAAGCAACAAGATGTCGGATCTTGGGGAATCCCATCAGCTACAGGCAAACCTCCTGGTACAGGCTGGCTGGGAGGACCTATACCAGCCCCAACAAAAGAAGAAGAGCCCACAGGCTGGGAGGAACCATCCCCAGAATCCATACGTCGCAAAATGGAGATCGATGATGGAACTTCAGCTTGGGGAGATCCAAGCAAATACAACTACAAAAATGTGAACATGTGGAACAAAAATGTCCCAAATGGCAGCAGCCGTTCAGACCAGCAAGCACAGGTACATCAGTTGCTACCATCTGCAAGTGCCATCTCAAACAAAGAGGCAAGCAGTGGCTCTGGCTGGGGTGAGCCCTGGGGTGAGACTTCTACTCCAGCCACAACTGTGGATAATGGTACTTCAGCATGGGGTAAACCCATAGACAGTGGTCCCAGCTGGGGCGAACCCATTGCTGCGGCATCCAGCACATCCACGTGGGGCTCCAGCTCTGTTGGTCCACAAGCATTAAGCAAATCTGGGCCAAAATCTATGCAAGATGGCTGGTGTGGTGATGATATGCCATTACCTGGAAATCGCCCCACTGGCTGGGAAGAGGAAGAGGAYGTAGAGATTGGAATGTGGAATAGTAATTCATCTCAAGAGCTTAATTCATCTTTAAATTGGCCACCATATACAAAGAAAATGTCATCGAAGGGAATGATGAAAGGTGGAAACAAACAAGAAGAAGCATGGATAAATCCATTTGTTAAACAGTTTTCAAATATCAGTTTTTCGAGAGACTCACCAGAAGAAAATGTACAGAGCAATAAGATGGACCTTTCTGGAGGAATGTTACAAGACAAACGAATGGAGATAGATAAGCATAGCCTAAATATTGGTGATTACAATCGAACGGTCGGGAAAGGCCCTGGTTCTCGGCCTCAGATTTCCAAAGAGTCTTCCATGGAGCGCAGTCCTTATTTTGATAAGGATGGCATTGTAGCAGATGAATCCCAAAACATGCAGTTTATGTCCAGTCAAAGCATGAAGCTTCCCCCTTCAAATAGTGCACTACCTAACCAGGCCCTTGGCTCCATAGCAGGGCTGGGTATGCAAAACTTGAATTCTGTTAGACAGAATGGCAATCCCAGTATGTTTGGTGTTGGAAACACAGCAGCACAACCCCGGGGCATGCAGCAGCCTCCAGCACAACCTCTCAGTTCATCTCAGCCTAATCTCCGTGCTCAAGTGCCTCCTCCATTACTCTCCCCTCAGGTTCCAGTTTCATTGCTGAAGTATGCACCAAACAACGGTGGCCTGAATCCGCTCTTTGGCCCTCAGCAGCGATTGTTAGCGCAGCAGCAAAGGGCGCAGAGTCAGAGAAGCGTGCCTTCTGGGAACCGGCAGCAGCAAGACCAGCAGGGTCGACCTCTTAGTGTGCAGCAGCAGATGATGCAACCATCTCGTCAACTTGATCCAAACCTGTTGGTGAAGCAACAGACTCCGCCGTCTCAGCAGCAGTCACTCCATCAGCCAGCCATGAAATCTTTCCTTGAAAATGTCATGCCCCACACTACACCTGAGCTGCAAAAAGGGCCATCACCAATAAATGCTTTCAGCAACTTCCCCATAGGCTTGAACTCAAACTTGAATGTAAATATGGATATGAACAGTATTAAAGAGCCACAGTCAAGACTAAGGAAGTGGACTACAGTGGACAGCATTTCTGTGAACACATCTTTGGATCAAAACTCCAGCAAACATGGTATAAAATACAYTCTTATATTTTGA

Related Sequences

bmy_18220T0 SequenceType object (3)

Length: 1334 aa      View alignments
>bmy_18220T0
INHNTSGSHYENSQRGPVSSTSDSSTNCKNAVVNDSPETEAWPSVPGSBPELASACVDADSASSSESERNVTIMASGSTGGENDGLRNSTGLGSQNKFVVGSSSNNVGHGSSTGPWGFSHGAIISTCQVSVDAPESKSESSNNRMNAWGTVSSSSNGGLNPSTLNSASNHGAWPVLENNGLALKGPVGSGSSGINIQCSTLGQMPNNQSINSKVGGSSTHGTWGSLQETCESEVSGTQKVSFSGQPQNITTEMTGPNNTTNFVTSSLPNSGSVQNNELPSNTGAWRVSTMNHPQIQAPSVVNGTSLSHLSNGESKSGGSYGTTWGAYGSNYSGDKCSSPNGQANGDTVNATLMQPGINGPMGTNFQVNTNKGGGVWESGAVNSQSASWGNGANSGGSRRGWGTPAQNTGTNTPSVEWSKLPSNQHSSDSANGNGKKFTNGWKSTEEEDQGSATSQTNEQNSVWAKTGGTVESEGSTESTGRLEEKVTGENQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGACTDKTSPSSNDTSSVSGWGDPKPTLRWGDSKGSNCQGGWEDDSAATGMAKSNQWGNCKEEKSAWNDSQKNKQGWGDGQKSNQGWSVSASDNWGETSRSNHWGEANKKSSSGGSDSDRSVSGWNELGKTSSFTWGNNINPNNSSGWDESSKPNPSQGWGDPPKSNQSLGWGDSSKPVSSPDWNKQQDVGSWGIPSATGKPPGTGWLGGPIPAPTKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNVPNGSSRSDQQAQVHQLLPSASAISNKEASSGSGWGEPWGETSTPATTVDNGTSAWGKPIDSGPSWGEPIAAASSTSTWGSSSVGPQALSKSGPKSMQDGWCGDDMPLPGNRPTGWEEEEDVEIGMWNSNSSQELNSSLNWPPYTKKMSSKGMMKGGNKQEEAWINPFVKQFSNISFSRDSPEENVQSNKMDLSGGMLQDKRMEIDKHSLNIGDYNRTVGKGPGSRPQISKESSMERSPYFDKDGIVADESQNMQFMSSQSMKLPPSNSALPNQALGSIAGLGMQNLNSVRQNGNPSMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAPNNGGLNPLFGPQQRLLAQQQRAQSQRSVPSGNRQQQDQQGRPLSVQQQMMQPSRQLDPNLLVKQQTPPSQQQSLHQPAMKSFLENVMPHTTPELQKGPSPINAFSNFPIGLNSNLNVNMDMNSIKEPQSRLRKWTTVDSISVNTSLDQNSSKHGIKYXLIF*