Part of scaffold_1707 (Scaffold)

For more information consult the page for scaffold_1707 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SDR16C5 ENSTTRG00000016853 (Bottlenosed dolphin)

Gene Details

short chain dehydrogenase/reductase family 16C, member 5

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015977, Bottlenosed dolphin)

Protein Percentage 91.63%
cDNA percentage 93.27%
Ka/Ks Ratio 0.46214 (Ka = 0.0479, Ks = 0.1038)

SDR16C5 ENSBTAG00000018570 (Cow)

Gene Details

epidermal retinol dehydrogenase 2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024714, Cow)

Protein Percentage 80.0%
cDNA percentage 86.67%
Ka/Ks Ratio 0.44591 (Ka = 0.1168, Ks = 0.262)

SDR16C5  (Minke Whale)

Gene Details

short chain dehydrogenase/reductase family 16C, member 5

External Links

Gene match (Identifier: BACU002322, Minke Whale)

Protein Percentage 95.47%
cDNA percentage 97.86%
Ka/Ks Ratio 0.7757 (Ka = 0.0207, Ks = 0.0266)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 798 bp    Location:122259..111710   Strand:-
>bmy_18225
ATGCCGCCCAACCTGAACTCAGTCAAGAACTTTTTCGTTTTCTTAGGAAAATCAGTGTTTGCCCTTCTGGAGGTTATGGTTTTTACCTTAATCCCAAGGCCACAGAAGAGTGTTGCTGGTGAAATCGTACTTATAACAGGCTCTGGGAGTGGACTTGGAAGGCTCTTAGCCCTCAAATTTGCCCGCCTTGGATCGGTGCTTGTTCTCTGGGATGTCAGCCAGGAGGGGAATGAGGAGACCAGCAAGATGGCTTGGGAAGCTGGAGCCACAAAGGTTTATGCCTATACCTGTGATTGCAGCCGGAAGGAGGAAGTGTATAGAGTGGCCGATCAGACTTATAAAGCCTTTCTACCTGCTATGATCGCTAATGACCATGGACATTTGGTCTGCATTTCAAGTTCAGCTGGATTAATTGGAGTAAATGGGCTGGCCGATTATTGTGCAACTAAATTTGCAGCCTTTGGATTTGCTGAATCGGTATTTATGGAAACATTTGCCAAGAAACAAAATGGGATCAAAACCACTATTGTGTGCCCATTTTTTATCAACACTGGAATGTTTGACGGTTGTACTACTGGCTGTCCTTTTCTGTTACCGATTCTGGAACCAGAATATGCAGTCAGGAAGATAGTAGATGCTATCCTGCAAGACAAACCGTACTTATATATGCCAAGATTTATGTACTTCATAGTGTTTTTAAAAAGTTTCTTGCCCCTCAAGCTTGGAATGCTTTTGGCTGAGTATATGGGTATCTTTAATTCAATGGATGGCTTCTCTGGCCATAAGAAGAAAGACTGA

Related Sequences

bmy_18225T0 Protein

Length: 266 aa      View alignments
>bmy_18225T0
MPPNLNSVKNFFVFLGKSVFALLEVMVFTLIPRPQKSVAGEIVLITGSGSGLGRLLALKFARLGSVLVLWDVSQEGNEETSKMAWEAGATKVYAYTCDCSRKEEVYRVADQTYKAFLPAMIANDHGHLVCISSSAGLIGVNGLADYCATKFAAFGFAESVFMETFAKKQNGIKTTIVCPFFINTGMFDGCTTGCPFLLPILEPEYAVRKIVDAILQDKPYLYMPRFMYFIVFLKSFLPLKLGMLLAEYMGIFNSMDGFSGHKKKD*