Part of scaffold_1697 (Scaffold)

For more information consult the page for scaffold_1697 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

APOA1 ENSTTRG00000011597 (Bottlenosed dolphin)

Gene Details

apolipoprotein A-I

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010994, Bottlenosed dolphin)

Protein Percentage 88.68%
cDNA percentage 90.06%
Ka/Ks Ratio 0.2351 (Ka = 0.0148, Ks = 0.0629)

APOA1 ENSBTAG00000002258 (Cow)

Gene Details

Apolipoprotein A-I Truncated apolipoprotein A-I

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002914, Cow)

Protein Percentage 90.57%
cDNA percentage 93.58%
Ka/Ks Ratio 0.16452 (Ka = 0.0402, Ks = 0.2442)

APOA1  (Minke Whale)

Gene Details

apolipoprotein A-I

External Links

Gene match (Identifier: BACU017297, Minke Whale)

Protein Percentage 97.74%
cDNA percentage 98.87%
Ka/Ks Ratio 0.82195 (Ka = 0.0088, Ks = 0.0107)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 798 bp    Location:100273..102508   Strand:+
>bmy_18239
ATGAAAGCCGTGGTGCTGACCTTGGCTGTGCTCTTCCTCACCGGGAGCCAGGCTCGGCATTTCTGGCAGCAAGATGACCCCCAGTCATCCTGGGATCGGGTGAAGGATTTTGCCACCGTGTACGTGGATGCAATCAAAGACAGTGGCAGAGACTATGTGTCCCAATTTGAAGCCTCCGCTTTGGGAAAACATCTCAACCTGAAACTCCTGGACAACTGGGAYAGCCTGACCAGCACGTTTGCCAAAGTGCGCGAACAGCTGGGCCCGGTGACCCGGGAGTTCTGGGACAACCTGGAAAAGGAGACAGAGTCGCTGAGGCAGGAGATGAACAAGGACCTGGAGGAGGTGAAGCAGAAGGTGCAGCCCTACCTGGACGAATTCCAGAAGAAGTGGCAGGAGGAGCTGCAGATCTACCGCCAGAAGGTGGCGCCGCTGGGCGAGGAGTTGCGCGAGGGCGCGCGCCAGAAGGTTCAGGAGCTGCAGGACAAGCTGACCCCGCTGGCCGAGGAGATGCGCGACCGCGCGCGCGCCCACGTGGAGACCCTGCGGCAGCAGCTGGCGCCTTTCAGTGACGACCTGCGCCAGCGCATGGCCGCCCGCTTCGAGATGCTCAAGGAGGGCGGCGGCAGCCTGGTCGAGTACCACGCCAAGGCCAGCGAGCAGCTGAAAGCGCTGGGCGAGAAGGCCAAGCCCGCGCTGGAGGACCTSCGCCAGGGCCTGCTGCCCGTGCTGGAGAACCTCAAGGTCAGCATCCTGGCCGCCATCGACGAGGCCTCCAAGAAGCTGAATGCCCAGTGA

Related Sequences

bmy_18239T0 Protein

Length: 266 aa      View alignments
>bmy_18239T0
MKAVVLTLAVLFLTGSQARHFWQQDDPQSSWDRVKDFATVYVDAIKDSGRDYVSQFEASALGKHLNLKLLDNWDSLTSTFAKVREQLGPVTREFWDNLEKETESLRQEMNKDLEEVKQKVQPYLDEFQKKWQEELQIYRQKVAPLGEELREGARQKVQELQDKLTPLAEEMRDRARAHVETLRQQLAPFSDDLRQRMAARFEMLKEGGGSLVEYHAKASEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*