Part of scaffold_1807 (Scaffold)

For more information consult the page for scaffold_1807 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RORC ENSTTRG00000003151 (Bottlenosed dolphin)

Gene Details

RAR-related orphan receptor C

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002954, Bottlenosed dolphin)

Protein Percentage 90.73%
cDNA percentage 91.76%
Ka/Ks Ratio 0.44506 (Ka = 0.038, Ks = 0.0853)

BT.49360 ENSBTAG00000017405 (Cow)

Gene Details

nuclear receptor ROR-gamma

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000041645, Cow)

Protein Percentage 95.26%
cDNA percentage 94.33%
Ka/Ks Ratio 0.11212 (Ka = 0.0223, Ks = 0.1988)

RORC  (Minke Whale)

Gene Details

RAR-related orphan receptor C

External Links

Gene match (Identifier: BACU007265, Minke Whale)

Protein Percentage 90.73%
cDNA percentage 92.34%
Ka/Ks Ratio 0.39929 (Ka = 0.0538, Ks = 0.1348)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1557 bp    Location:257462..281791   Strand:+
>bmy_18544
ATGGACAGGGCCCCACAGAGACACCACCGAGCCTCGCAGGAGCTGCTGGCTGCAAAGAAGACCCACACCTCACAAATTGAAGTGATCCCTTGCAAAATCTGTGGGGACAAATCATCTGGGATCCATTACGGGGTTATCACCTGTGAGGGGTGCAAGGGTTTCTTCCGCCGGAGCCAGCAGTGTAACGTGGCTTACTCCTGCACCCGTCAGCAGAACTGCCCCATCGACCGCACTAGCCGAAACCGATGCCAGCACTGCCGCCTGCAGAAATGCCTGGCCCTGGGCATGTCCCGAGATGCTGTCAAGTTTGGCCGCATGTCCAAGAAGCAAAGGGACAGCCTGCATGCTGAGGTGCAGAAACAACTGCAACAGCGGCAACAGCAGCAGAGGGAACAAGCAGCCAAGACCCCTCCTGCAGGAGCCCAAGGAGCAGACACCCTCGCCTGCACCTTGGGGCTCCCAGATGGGCAGCTGCCCCTGGGCTCCTCGCCTGACCTGCCGGAGGCCTCAGCCTGTCCCCCCAGTCTCCTGAGAGCCCCAGGCTGCGGGCCCTCCTACTCCAACAGCTTGGCCAAGGCCGGGCTCAACGGGGCCTCGTACCACCTGGAATACAGCCCTGAGCGGGGCAAGGCCGGGGGCAGGGAGAACTGCTATGGCACAGGCAGCCAGCCGGCCCCTGACAGGTGTGGACTCCACTTCGAGGACCCCAGGCACCCTGGGCTTGGGCAACCAGGACGGGGCCCGGACAGCTACTTCAGCCCCAGTTTCCGCAGCACCCCAGAGGCGCCTTATGCCTCCCTGACGGAGATTGAGCATCTGGTGCAGAACGTTTGTAAGTCCTACCGAGAGACGTGTCAGCTGCGGCTGGAGGACCTGCTCGGACAGCGCTCCACCGTCTTCTCCCGAGAGGAGGTGGCTGGCTACCAGAGGAAGTCAATGTGGGAGATGTGGGAACGCTGTGCCCACCGCCTCACCGAGGCCATTCAGTATGTGGTGGAGTTCGCTAAGAGGCTCTCGGGCTTTATGGAGCTCTGCCAGAATGACCAGATCGTGCTACTCAAAGCAGGAGCCATGGAAGTGGTGCTGGTCAGGATGTGCCGGGCCTACAATGCTGACAACCATACAGTCTTTTTTGAAGGCAAATACGGTGGCATGGAGCTCTTCCGAGCCTTGGGCTGCAGCGAGCTCATCAGCTCCATCTTTGACTTCTCCCACTCCCTGAGTGCCTTGCATTTTTCCGAGGACGAGATTGCCCTCTACACGGCCCTCGTCCTCATCAATGCCAACCGGCCAGGGCTCCAAGAGAAAAGGAAAGTAGAACAGCTGCAGTACAATCTGGAGCTGGCCTTTCATCATCATCTCTGCAAGACTCATCGCCACGGCATCCTGGCAAAGCTGCCACCCAAGGGGAAGCTTCGGAGCCTGTGTAGCCAGCATGTGGAAAAGCTGCAAACCTTCCAGCATCTCCACCCCATCGTGGTCCAAGCTGCTTTCCCTCCGCTCTACAAGGAACTCTTCAGCACTGAAATCGAGTCACCTGAGGGGCTGTCCAAGTGA

Related Sequences

bmy_18544T0 Protein

Length: 519 aa      View alignments
>bmy_18544T0
MDRAPQRHHRASQELLAAKKTHTSQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQQRQQQQREQAAKTPPAGAQGADTLACTLGLPDGQLPLGSSPDLPEASACPPSLLRAPGCGPSYSNSLAKAGLNGASYHLEYSPERGKAGGRENCYGTGSQPAPDRCGLHFEDPRHPGLGQPGRGPDSYFSPSFRSTPEAPYASLTEIEHLVQNVCKSYRETCQLRLEDLLGQRSTVFSREEVAGYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRHGILAKLPPKGKLRSLCSQHVEKLQTFQHLHPIVVQAAFPPLYKELFSTEIESPEGLSK*