Part of scaffold_1798 (Scaffold)

For more information consult the page for scaffold_1798 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CALR3 ENSTTRG00000014988 (Bottlenosed dolphin)

Gene Details

calreticulin 3

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014207, Bottlenosed dolphin)

Protein Percentage 61.03%
cDNA percentage 64.14%
Ka/Ks Ratio 0.72298 (Ka = 0.1186, Ks = 0.1641)

BT.54234 ENSBTAG00000033222 (Cow)

Gene Details

calreticulin-3 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000013175, Cow)

Protein Percentage 79.24%
cDNA percentage 85.12%
Ka/Ks Ratio 0.4001 (Ka = 0.1339, Ks = 0.3346)

CALR3  (Minke Whale)

Gene Details

calreticulin 3

External Links

Gene match (Identifier: BACU010313, Minke Whale)

Protein Percentage 88.62%
cDNA percentage 91.84%
Ka/Ks Ratio 0.816 (Ka = 0.0837, Ks = 0.1026)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 873 bp    Location:385452..368190   Strand:-
>bmy_18571
ATGAAACCGCAGCAGGGTAATTCCAAACAGTCTCGGAAGGAGAATGGTTGGGGATATCCTGTGGTGATGCATGACAGAAGGAAATTGAGAGCAGTTAATATTTTTTTTGTAGGACCTGATATTTGTGGATTTGATGTCAAGAAAGTTCATGTTATTTTACATTTCAAGAATCAGTATCACTCAAACAAGAAATCAATCAGGTGTAAGGTTGATGGCTTCACACACCTCTACACTTTGATTTTAAGACCAGACCTCACTTACGAAGTGAAAATTGATGGTCAGTCGATTGAATCCGGCAGCATAGAGTATGACTGGCAGCTCACATCACTGAAGAAAATGGAGAAGGCTTCAGCAGAGTCTGAGGACTGGGACCAGGCTACAGAGGGCAAATCCCAGGCCTGGGAGAAGCACTTTCTGGATGCCAGTGCCAGCACGCCGAGCGACTGGAACAGCGAACTGGACGGGGACCGGCAGGCGCCGATGCTGCAGAAGCCTCCACACCAAGATGGCCTGAAACCAGAGGGCATAGACAGAGATGTTTGGCTCCATCAGAAGATGAAAAACACCAACTATCTGACGGAATATGACCTCTCAGAATTTGAGAACATCGGTGCCATCGGACTGGAGCTTTGGCAGGTGAGATCCGGAACCATCTTYGATAACTTCCTGATCACAGATGATGAAGAGTACGCTGAGAATTTTGGCAAGGCCACCTGGGGTGAAACCAAGGGCCCAGAAAGGGAGATGGATGCCATACAGGCCAAGGAAGAAGTGAAGAAGGCCCGAGAGGAAGATGAGGACGAGCAGATGATGGGCAGGTTTGGTGGGAGAGAAAATATCTTCAAAGGATTCCACAAGAGGAACGAACTTTAG

Related Sequences

bmy_18571T0 Protein

Length: 291 aa      View alignments
>bmy_18571T0
MKPQQGNSKQSRKENGWGYPVVMHDRRKLRAVNIFFVGPDICGFDVKKVHVILHFKNQYHSNKKSIRCKVDGFTHLYTLILRPDLTYEVKIDGQSIESGSIEYDWQLTSLKKMEKASAESEDWDQATEGKSQAWEKHFLDASASTPSDWNSELDGDRQAPMLQKPPHQDGLKPEGIDRDVWLHQKMKNTNYLTEYDLSEFENIGAIGLELWQVRSGTIFDNFLITDDEEYAENFGKATWGETKGPEREMDAIQAKEEVKKAREEDEDEQMMGRFGGRENIFKGFHKRNEL*