Part of scaffold_1824 (Scaffold)

For more information consult the page for scaffold_1824 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

DSC2 ENSTTRG00000006848 (Bottlenosed dolphin)

Gene Details

desmocollin 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006474, Bottlenosed dolphin)

Protein Percentage 89.98%
cDNA percentage 95.21%
Ka/Ks Ratio 1.34535 (Ka = 0.0542, Ks = 0.0403)

DSC2 ENSBTAG00000040584 (Cow)

Gene Details

desmocollin-2 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000011306, Cow)

Protein Percentage 85.56%
cDNA percentage 89.49%
Ka/Ks Ratio 0.38175 (Ka = 0.083, Ks = 0.2174)

DSC2  (Minke Whale)

Gene Details

desmocollin 2

External Links

Gene match (Identifier: BACU001566, Minke Whale)

Protein Percentage 95.06%
cDNA percentage 97.59%
Ka/Ks Ratio 1.18273 (Ka = 0.0262, Ks = 0.0221)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2733 bp    Location:326736..294546   Strand:-
>bmy_18606
ATGGCGGCAGCGCGACCCACAGGCTCCGCGAGCGGAGCCCTTTGCCGGCAACTCCTGCTGACCCTCACGATCTTAACATTTGCCTGTGATGCCTGCAAAACAGTGACACTACATGTTCCCTCCAAACTAGATGCTGGAAAATTTATTGGTAGAGTTGACCTGAAGGAGTGCTTTAAATCTGCAAATTTAATTCATTCAAGTGATCCTGATTTCCAAATTTTAGAAGATGGTTCAGTCTATACAACAAATGCCATTCTTTTGTCCTCAGCGAAGAGATCTTTTACCCTATTACTTTCCAACACAGAGACCCAAGAAGAGAAGAAAATACTTGTCCTTTTAGAGCAACAAACAAAGGTACTAAGGAAAAGGCGTTCTCAAGAAAAAGTTCTAATACGTGCCAAGAGAAGATGGGCTCCTATTCCTTGTTCAGTGTCTGAGAATTCCTTGGGTCCTTTCCCACTTTTTCTTCAACAGATTCAGTCTGATACAGCACAAAACTACACTATTTACTATTCCATAAGTGGGCCTGGAGTTGACAAAGAACCTCTAAATTTATTTTATGTAGAGAGAGATACTGGAAACCTGTTTTGTACTCGTCCTGTAGATCGTGAAAAGTATCCATCTTTTGAGCTAGTTGCCTTTGCAACAACTCAGGATGGATATACTCCAGAATATCCACTGACCCTACTAATCAGAATCGAGGATGAGAATGATAACTTCCCAATTTTTACAGAGACAACTTACATTTTTAATGTTTCTGAAAATTGCAGAGTTGGCACTACCGTGGGACAGGTTTGTGCAACTGACAAAGACGAGGCTGACACACTGCACACGCGTCTAAAGTACTCCATCATCGAGCAGTTTCCAGCATCACCCACCCTCTTTTCTATGCATCCAACTACAGGTGTGATCACCACATCATCATCTCAGCTAGACAGAGAGCTAATTGATAAATACCAATTGAAAATAAAAGTGCAAGACATGGATGGTCAGTATTTTGGTTTGCAGACAACTGCAGCTTGCATCATTAATATTGAAGATGTGAATGACAACTTGCCAACATTCACCCGTTCTTCTTATGTGACATCAGTGGAGGAAAATAGAATTGATGTGGAAATCTTACGTGTTGCCGTTGAGGATAAGGATTTAATTAATACTTCTAATTGGAGAGCTAATTATACCATTTTAAAGGGCAATGAAAATGGAAATTTTAAAATTGTAACAGATCCCAAAACCAATGAAGGAGTTCTGAGTGTGGTTAAGCCACTGAATTACGAAGAAAAACAAGAGGTGACCCTGCAAATCAGTGTAGTTAATGAAGCTCCATATTCTAGTAGTTCAAGATCAACCGTGAACATGGTGACAGTCACTGTTAATGTACAAAATCAGGATGAAGGCCCTGAGTGTAGCCCTGCAGTGCAAATTGTTCGTATTAAAGAAAATGTACCAGTGAGCACAAAGGTCAGTGGATATAAAGCACATGACCCGGAAACAAGTAGTAGCAGTGGCATAAGCTATAAGAAATTAAGTGATCCAGAAGGATGGGTCACTGTTGATGAAAACTCAGGATCAATCACAACTTTCAGAAGGCTGGATAGAGAGGCAAAGACCGTCAGAAATGGTATATATAATATCACAATCCTTGCCTCAGACAAAGATGGGAGAACATGTACTGGGACACTAGGGATTAAACTTGAAGACGTGAATGATAACAGCCCATTCATACCTCAGCGGACAGTGATAATCTGTAAAACTGTCGTGTCATCGGCGGAGATTGTGGCCGTAGATCCCGATGAACCCATACACGGCCCACCCTTTGACTTCAGTTTGGACGGTGTTTCTGATTCAGAAGTATTTAGAATGTGGAGACTGACAAAAATTAACGATACAGCAACACGTCTTTCCTATCTGAATGACCCCCCGTTTGGACGATATACAGTACCTGTCAGAGTTACAGATAGGCTTGACCAATCACTTGTCACTCAATTAAACGTGATATTATGTGACTGTGTTACCCCAAGTGACTGCAACATTGAAAGTGCTCCGAACATTGCCAGCGGAGGACTGATACTTGGAAAGTGGGCCATCCTTGCAATATTGTTGGGCATAGCATTGCTATTTTGTATCCTATTTACCTTGGTCTGTGGAGCTACTGGAGCAGCCAAAAAGCCAAAAGTACTTCCTGATGATTTAGCCCAGCAGAACCTCATTGTATCAAACACTGAAGCTCCCGGCGATGACAAAATGTATTCCACCAATGGCTTCACAACCCATACTGCGGGAGGCTCCACTCAGGGAATTTGCAACACCCTGGGATCCAGAGTGAAAAACGGAGGGCAGGAGACCATTGAAATGGTGAAAGGAGGGCAGACCATTGAGTCCTGCCAGGAGGCCGGGCATCATCACACCCTGGAAGTGTGTAAGGGAGGTGGACAGCACACCCTGGATTCCTGCAGAGGAGGACAAGTAGAGGCGGATAACTGCAGATACCCGTACTCCGAGTGGTACACCTACACTCAGCCCCGCCTTGGTGAAAGGATCCAGCAGTGTAATCAGGATAACAGTCATATGCATGCTCAAGACTACGTCCGGACGTATAACTATGAAGGAAAAGGATCGGCGGCTGGTTCTGTGGGTTGTTGCAGTGAACGACAAGAAGAAGATGGGCTTGAATTTTTGGATCATTTGGAACCCAAATTTAGGACACTAGCAGAAACATGCATGAAGAGATGA

Related Sequences

bmy_18606T0 Protein

Length: 911 aa      View alignments
>bmy_18606T0
MAAARPTGSASGALCRQLLLTLTILTFACDACKTVTLHVPSKLDAGKFIGRVDLKECFKSANLIHSSDPDFQILEDGSVYTTNAILLSSAKRSFTLLLSNTETQEEKKILVLLEQQTKVLRKRRSQEKVLIRAKRRWAPIPCSVSENSLGPFPLFLQQIQSDTAQNYTIYYSISGPGVDKEPLNLFYVERDTGNLFCTRPVDREKYPSFELVAFATTQDGYTPEYPLTLLIRIEDENDNFPIFTETTYIFNVSENCRVGTTVGQVCATDKDEADTLHTRLKYSIIEQFPASPTLFSMHPTTGVITTSSSQLDRELIDKYQLKIKVQDMDGQYFGLQTTAACIINIEDVNDNLPTFTRSSYVTSVEENRIDVEILRVAVEDKDLINTSNWRANYTILKGNENGNFKIVTDPKTNEGVLSVVKPLNYEEKQEVTLQISVVNEAPYSSSSRSTVNMVTVTVNVQNQDEGPECSPAVQIVRIKENVPVSTKVSGYKAHDPETSSSSGISYKKLSDPEGWVTVDENSGSITTFRRLDREAKTVRNGIYNITILASDKDGRTCTGTLGIKLEDVNDNSPFIPQRTVIICKTVVSSAEIVAVDPDEPIHGPPFDFSLDGVSDSEVFRMWRLTKINDTATRLSYLNDPPFGRYTVPVRVTDRLDQSLVTQLNVILCDCVTPSDCNIESAPNIASGGLILGKWAILAILLGIALLFCILFTLVCGATGAAKKPKVLPDDLAQQNLIVSNTEAPGDDKMYSTNGFTTHTAGGSTQGICNTLGSRVKNGGQETIEMVKGGQTIESCQEAGHHHTLEVCKGGGQHTLDSCRGGQVEADNCRYPYSEWYTYTQPRLGERIQQCNQDNSHMHAQDYVRTYNYEGKGSAAGSVGCCSERQEEDGLEFLDHLEPKFRTLAETCMKR*