Part of scaffold_1824 (Scaffold)

For more information consult the page for scaffold_1824 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

DSC1 ENSTTRG00000008985 (Bottlenosed dolphin)

Gene Details

desmocollin 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008526, Bottlenosed dolphin)

Protein Percentage 64.83%
cDNA percentage 68.83%
Ka/Ks Ratio 0.73458 (Ka = 0.0788, Ks = 0.1073)

DSC1 ENSBTAG00000019876 (Cow)

Gene Details

desmocollin-1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000026482, Cow)

Protein Percentage 80.78%
cDNA percentage 87.14%
Ka/Ks Ratio 0.48366 (Ka = 0.1151, Ks = 0.2379)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2097 bp    Location:370626..344356   Strand:-
>bmy_18607
TTAATATTATTTTGCGATGCTTGTCAGAAAATTTCTCTTCAGGTTCCTTCTCATCTTCAGGCTGAAGCACTTGTAGGCAAAGTGAATCTGAAGGAGTGTCTCCAGTCGGCCAGCCTAATTCAGTCAAGCGATCCTGACTTCAGAATTCTAGAAGATGGCTCCATTTACACAACACATGACCTCATTTTGTCTTCTGAAAAGAAGAGTTTTTCCATTTTGCTTTCAGACACTCAGGGACAGGAACAGAAGGAGATAGAAATTGTACTGGAAGCAGGAGGAAGGAAGATTCCTAAGAGATATCCCAAAGATACAGACCTCAAGCGAAGCAAGAGGCGATGGGCGCCTATTCCGTGTTCGCTGATGGAGAACTCACTAGGTCCATTTCCACAGCACCGTTCAGCAGTTGAAGATGATAACGATAATGCCGCATATTTTGAAGACAAAGTGACTGTCTTTAGTGTGCCTGAGAATTGCCAAACCGGAAYTTCAGTGGGAAAAGTGACTGCCATAGACCTCGATGAACCTGACACTCTACATACTCATCTGAAATATAAAATCTTACAGCAAATTCCAGACAATCTAAAGCATTTCTCCGTACATCCAGACACAGGTGTCATCACCACAACTACACATTTACTGGATAGAGAAAAATGTGATACGTACAAGTTAATAATGGAAGTGCGAGACATGGGGGGCCAACCTTTTGGTTTATTTAATACAGGAACAATTACTATTTCRCTTGAGGATGAAAATGACAATTCACCATGTTTTACAGAAACTTCTTATTTTACAGAAGTAGAAGAAAACAGAATTGACTTTGAGATTTTACGGATGGCGGTGTATGACCAGGATTTGCCAAACACGCCTCACTCAAAAGCTTCATTGAACTATGAAGTCCATCGCCAAATGGTTTTGCAAATTGGTATACTTAACGAAGCACAATTCTCTAAAGCAGCAAACTCACAAACTCCTACTATGTGCATTACAACTGTCACTGTTAAAGTTAAAGACCATGATGAGGGCCCTGAATGCCAACCACCAGKAAAAGTTATTAAGAGTAAAGATGGTCTCCCAGTGGGCACAACACTCCTTGGATACGAAGCAGTGGATCCGGACAGCGGCACTGCTGAGGGCTTAAGATATAAGAAGATAAGAGATGAAGATAACTGGTTTGAAATTAATGAATACACTGGTGACTTGAAAACTGTAAAAGTTCTAGATAGAGAATCAACATTTACAACCAATAAATACAATGTTTCCGTGATTGCAATGGATGCAGATGATAATGATCACCCACCACAAATTGAAAAAGAAGTGACAATTTGTCGGCATGATAAGGATGTTGCTGTTCTCAACCCTGTAGATCAAGATGGACCTGATAATGGGCCACCTTTTCAATTCATTCTCGATAATTCTGCCAGCAAACTTTGGACRATAGAGACATTAACGGATGGTAAAACTGCCATTCTTCGTGAACTGCAAAATCTTGATTATAACTATTATTCTGTGCCTCTCCAAATAAAAGATAGACATGGCATTTCTGCAAAACACATGTTATCAGTGAGARTATGTGACTGTACAATTCCATCTGAATGTAGAATGACTACTAAAGTTCCGAGAGATGCAAGGCGATCAAATGCAATACTTGGAAGATGGGCTATTCTTGCCATGGTGTTGGGTTCTGCATTGTTGTCATGTAAGTATAATTATCTAGAATGTATGTTTTGTTTACATAGTACAGTAAAGAAATGTTTTCCAGAAGATGTAGCCGAGCAAAACATAATTGTATCAAATACTGAAGCACCCGGAGAAGAAGTGATAAAATCCAACATCTGTGACACAAGCATGTCTGTTGGCACACTTGGTGGCCAGGGAGTCAAAACACATCAAAGTTTTGATGTGGCCAAAGGCTGCTACACTTTGGATCCCATCAAAGGAGGCAGACATCAGACCTTGGAATCTGTCAAGGGTGTAGGACAAGGAGTGACGGACACCAGCAGATACACATACACCGACTGGCACAGCTTCRCCCAACCTCGGCTTGGCAAAAAGGTGTATCTGTGTGGAAAAGACGAGGAGCATAAACAGTCGGCAGAC

Related Sequences

bmy_18607T0 Protein

Length: 699 aa      View alignments
>bmy_18607T0
LILFCDACQKISLQVPSHLQAEALVGKVNLKECLQSASLIQSSDPDFRILEDGSIYTTHDLILSSEKKSFSILLSDTQGQEQKEIEIVLEAGGRKIPKRYPKDTDLKRSKRRWAPIPCSLMENSLGPFPQHRSAVEDDNDNAAYFEDKVTVFSVPENCQTGXSVGKVTAIDLDEPDTLHTHLKYKILQQIPDNLKHFSVHPDTGVITTTTHLLDREKCDTYKLIMEVRDMGGQPFGLFNTGTITISLEDENDNSPCFTETSYFTEVEENRIDFEILRMAVYDQDLPNTPHSKASLNYEVHRQMVLQIGILNEAQFSKAANSQTPTMCITTVTVKVKDHDEGPECQPPXKVIKSKDGLPVGTTLLGYEAVDPDSGTAEGLRYKKIRDEDNWFEINEYTGDLKTVKVLDRESTFTTNKYNVSVIAMDADDNDHPPQIEKEVTICRHDKDVAVLNPVDQDGPDNGPPFQFILDNSASKLWTIETLTDGKTAILRELQNLDYNYYSVPLQIKDRHGISAKHMLSVRXCDCTIPSECRMTTKVPRDARRSNAILGRWAILAMVLGSALLSCKYNYLECMFCLHSTVKKCFPEDVAEQNIIVSNTEAPGEEVIKSNICDTSMSVGTLGGQGVKTHQSFDVAKGCYTLDPIKGGRHQTLESVKGVGQGVTDTSRYTYTDWHSFXQPRLGKKVYLCGKDEEHKQSAD