Sequence details bmy_18612 (Coding sequence)

Part of scaffold_1846 (Scaffold)

For more information consult the page for scaffold_1846 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NUP54 ENSTTRG00000014380 (Bottlenosed dolphin)

Gene Details

nucleoporin 54kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013631, Bottlenosed dolphin)

Protein Percentage 94.88%
cDNA percentage 94.8%
Ka/Ks Ratio 0.12016 (Ka = 0.0042, Ks = 0.0352)

BT.86779 ENSBTAG00000019579 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053680, Cow)

Protein Percentage 95.53%
cDNA percentage 95.45%
Ka/Ks Ratio 0.1443 (Ka = 0.0204, Ks = 0.1415)

Additional orthologs identified in other species via the OPTIC pipeline.

NUP54 (Human)   Nup54 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1356 bp    Location:154268..182319   Strand:+
Raw sequence 
>bmy_18612
GGTGGGTTTAGTGGATTTGGGACGCCGTCTACAACAGCAGGTTCTGCGTTCAGCTTTTCTGCTCCAGCTAACACGGGCACTACTGGACTCTTCGGTGGTGCTCAGAACAAAGGTTTTGGATTTGGCACTGGCTTTGGTACAACAGCTGGAACTAGTACTGGTTTAGGTACTGGTTTGGGAACTGGACTTGGATTTGGAGGATTTCATACCCAACAGCAGCAGCAGCAGCAACAGACTACATTAGGTGGTCTCTTCAGCCAGCCTACACAAGCTCCTGCCCAGTCCAACCAACTGATAAATACTGCAAGTGCTCTTTCTGCTCCAACGCTGCTGGGAGATGAGAGAGATGCTATTTTGGCAAAATGGAATCAACTACAGGCCTTTTGGGGAACAGGAAAAGGATATTTCAACAGTAACATTCCACCAGTGGAATTCACACAAGAAAACCCATTTTGCCGTTTTAAGGCAGTAGGTTATAGTTGTATGCCCAATAATAAAGATGAAGATGGGCTAGTGGTTTTAGTTTTCAACAAAAAAGAAACAGATATTCGAAGCCAGCAACAGCAATTGGTAGAATCATTGCATAAAGTTTTGGGAGGAAACCAGACCCTTACTGTAAATGTAGAGGGTATTAAAACATTGCCAGATGATCAGACAGAAGTTGTCATTTATGTTGTTGAGCGTTCTCCAAATGGTACTTCAAGAAGAGTTCCAGCTACAACACTATATGCCCATTTTGAACAAACCAATATAAGAACACAGTTGCAGCAACTTTGTGTAACCCTTTCTATGACTAGAACAGAACTTTCTCCTGCACAGATCAAACAGCTTTTACAGAATCCTCCCGCTGGTGTTGATCCAATTATCTGGGAACAAGCCAAGGTGGATAACCCTGATTCTGAAAAGTTAATTCCTGTACCAATGGTGGGTTTCAAAGAACTTCTTCGAAGACTGAAGGTTCAAGATCAGATGACTAAGCAGCATCAGACCAGATTAGATATCATATCTGAAGATATTGGTGAATTACAGAAGAATCAAACTACAACTATGGCCAAAATTGCACAATACAAGAGGAAACTCATGGACCTTTCCCATAGAACCTTACAGGTCCTAATCAAACAGGAAATTCAGAGGAAGAGTGGGTATGCCATCCAAGCTGATGAAGAGCAGTTGCGAGTTCAGCTAGATACAATTCAGTGTGAACTAAATGCCCCTACTCAGTTTAAGCATTTGAAACAACAACAGGAAGGCCTTAGCCACTTGATTAGCATCATAAAAGATGACTTAGAAGATATCAAGTTGGTAGAACATGGATTGAATGAAACCATCCACATCAGAGGTGGTGTCTTCAGTTGA

Related Sequences

bmy_18612T0 Protein

Length: 452 aa      
>bmy_18612T0
GGFSGFGTPSTTAGSAFSFSAPANTGTTGLFGGAQNKGFGFGTGFGTTAGTSTGLGTGLGTGLGFGGFHTQQQQQQQQTTLGGLFSQPTQAPAQSNQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNSNIPPVEFTQENPFCRFKAVGYSCMPNNKDEDGLVVLVFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQTEVVIYVVERSPNGTSRRVPATTLYAHFEQTNIRTQLQQLCVTLSMTRTELSPAQIKQLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDIGELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQCELNAPTQFKHLKQQQEGLSHLISIIKDDLEDIKLVEHGLNETIHIRGGVFS*