Sequence details bmy_18616 (Coding sequence)

Part of scaffold_1846 (Scaffold)

For more information consult the page for scaffold_1846 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CXCL10 ENSTTRG00000008981 (Bottlenosed dolphin)

Gene Details

chemokine (C-X-C motif) ligand 10

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008515, Bottlenosed dolphin)

Protein Percentage 77.17%
cDNA percentage 78.99%
Ka/Ks Ratio 0.50445 (Ka = 0.2161, Ks = 0.4284)

CXCL10 ENSBTAG00000001725 (Cow)

Gene Details

C-X-C motif chemokine 10

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000039324, Cow)

Protein Percentage 72.28%
cDNA percentage 78.88%
Ka/Ks Ratio 0.45483 (Ka = 0.2105, Ks = 0.4629)

CXCL10  (Minke Whale)

Gene Details

chemokine (C-X-C motif) ligand 10

External Links

Gene match (Identifier: BACU019521, Minke Whale)

Protein Percentage 76.34%
cDNA percentage 79.93%
Ka/Ks Ratio 0.66452 (Ka = 0.2226, Ks = 0.3349)

Additional orthologs identified in other species via the OPTIC pipeline.

CXCL10 (Human)   Cxcl10 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 369 bp    Location:302208..304562   Strand:+
Raw sequence 
>bmy_18616
ATGTTTTTGGAGACACTCCTCAACTGTTCAGGCAGTCTGAGCCTACTACAGAAGAACCTTCAGTTGCAGCACCATGAACCAAAGTGCTGTTCTTATTTTCTGCCTTATCCTTCTGACTCCGAGAGGAACTCAAGGACTACACGCTGTACGTGCATCAAGATCAGTGATCGACCTGTTAATCCAAGGTCCTTAGAAAAACTTGAAGTGATTCCTGCAAGTCAATCTTGCCCACGTGTTGAGATCATTGCCACAATGAAAAAGGACGGGGAGAAAAGATGTCTTAATCCAGAGTCTAAGACCATCAAGAATTTACTGAAAGCAATTAGCAAGAAAAGGTCCAGAAGATCTCAAACACAGAAAGAGGCATAA

Related Sequences

bmy_18616T0 Protein

Length: 123 aa      View alignments
>bmy_18616T0
MFLETLLNCSGSLSLLQKNLQLQHHEPKCCSYFLPYPSDSERNSRTTRCTCIKISDRPVNPRSLEKLEVIPASQSCPRVEIIATMKKDGEKRCLNPESKTIKNLLKAISKKRSRRSQTQKEA*