Sequence detailsbmy_18622 (Coding sequence)

Part of scaffold_1809 (SequenceType object (1))

For more information consult the page for scaffold_1809 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

DSG1ENSTTRG00000000864 (Bottlenosed dolphin)

Gene Details

desmoglein 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000000815, Bottlenosed dolphin)

Protein Percentage 82.12%
cDNA percentage 85.49%
Ka/Ks Ratio 0.74453 (Ka = 0.0416, Ks = 0.0559)

DSG1ENSBTAG00000013831 (Cow)

Gene Details

desmoglein-1 precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000018382, Cow)

Protein Percentage 82.35%
cDNA percentage 88.24%
Ka/Ks Ratio 0.51411 (Ka = 0.1064, Ks = 0.207)

DSG1 (Minke Whale)

Gene Details

desmoglein 1

External Links

Gene match (Identifier: BACU001567, Minke Whale)

Protein Percentage 94.85%
cDNA percentage 97.51%
Ka/Ks Ratio 0.86049 (Ka = 0.0237, Ks = 0.0276)

Additional orthologs identified in other species via the OPTIC pipeline.

DSG1 (Human)  

Genome Location

Sequence SequenceType object (2)

Length: 2859 bp    Location:74687..111103   Strand:+
Raw sequence 
>bmy_18622
ATGAACTGGCCCTTCTTCAGAACAGCTGCAGTGCTGTTCATTTTCCTGGTGGTGCTGGAAGTTAACAGTGAATTTCAAATCCAGGTCAGAGATTATAACACTAAAAATGGCACCATCAAGTGGCATTCCGTCAGGAGGCAAAAACGTGAGTGGATCAAGTTCGCTGCAGCCTGCCGTGAAGGTGAGGACAACTCAAAGAGGAACCCAATTGCCAAAATTCACTCAGATTGTGCTGCAAACCAGCAAGTTACATACCGCATCTCTGGAGTAGGAATTGATCAACCACCTTATGGAATCTTTGTTGTTAATCAAAAAACTGGTGAAATTAATATAACATCCATAGTTGATCGAGAGGTCACCCCGTTTTTCATTATCTATTGTCGGGCTGTGAATTCACTGGGCCAAGATTTGGAGAGAATTCTTGAGCTCAGAGTCAGGGTTTTGGATATAAATGACAACCCTCCRGTATTTTCTATGTCTACTTTTCTGGGACAAATAGAAGAAAATTCTAATGCCAATACACTGGTGATGATGCTCAATGCTACTGATGCAGATGAACCAAATAATTTGAACTCCAAAATAGCCTTCAAGATCGTAAGACAAGAACCTCCTGATTCAACAATGTTTATTATCAACAGATACACTGCAGAAATTCGAACAAGGAATAATTTTCTKGACAGAGAGCAATATGGCCAGTACTCTCTATTTGTAAGAGGCTCAGACCGAGATGGTGGGGCAGATGGAATGGCAGCAGAGTGTGAATGCAGCATTAAAATCCTCGATGTCAATGATAACATCCCATACATGGAACAGTCATCATATTCTATAAGTATTGAAGAAAATGCTCTAAATTCAAATTTGCTCCAGATTAGAATAATTGATTTGGATGAGGAGTTCTCAGCTAACTGGATGGCAGTCATTTTCTTTATCTCTGGAAATGAGGGAAATTGGTTTGATATAGAAATGAATGAAAGAACAAATGTGGGAACTTTAAAGGTTATTAAGCCCCTAGATTATGAAGCTATGAAGAATCTGCAACTTAGTCTTGGTGTTAGAAATAAAGCTGAATTTCATCAATCAATTATGTCTCAATATAAACTCACAGCAACTGCAGTCTCTGTGACTGTGTTAAATGTAGTTGAAGGCTCAGTGTTCCGTCCAGGTTCAAAGACATTCACAGTAACTAGAGAGATGGGACAAAGCTATCAATTGGGAGACTTTATAGCTACTGATCTGGACACAGGTCTACCTTCAACCACTGTTAGATATGTAATGGGAAGTAATCCAGCTGGCCTAATCGCTATTGACTCAAAAACGGGCATAATTATTTTGAGAAATAAAGTTACTGTTCAACAATATGAAATACTTAAGGAAAAATACCAAGGAACAATTCTATCTATAGATGATGCTCTTCAAAGAACTTCTACTGGTACAATTATTATTAAACTTGAAGATGATGAACCTTCTAATAACAATACCAGTACTAGCACAAATGGCCTTACTTCCTCAGATGTTACCACTAATACCWACAAAAACGATGGCACGGTTAGCACAAACACTTTTGTTGTAGGTCACTCCACTGCTTTTAATCTAAAAAACAATGATAATGTACATTTTGGTCCTGCTGGCATTGGACTACTCATCATGGGATTCTTGGTCCTAGGATTGGTCCCATTTTTGTTGATGTTTTGTGACTGTGGAGGTGTCCCTGGTAGCGGGGGCAGATTTAAGCCTGTTCCTGAATGTTTGGATGGAGCAATTCATTCGTGGGCGGTGGAAGGAGCGCAGCCCAAACTTGTGGATTTGACCAATATCTCTGCACCACAAATACCACCCAATAACGCAGATATTATTGAGTGCCTTGACAACTCAGGGGTTTACACAAATGAGTATCGTGGCAGAAAAATGCAAGATCTGGGAGGAGGAGAAAAAACGACAGCATTGGAAGTAGTGGATGGAGTTAAAACATCAGGAGCACCTAAGATATGTCAAGAATATTCTGGAACATTAAGAAGAAGTTCTATGAGGGAATGTAGAGAAGGAGGGCTGAATATGAACTTCATGGAAAATTACTTCTGCCAGAAAGCATATGCTTATGCAGATGAAGACGAAGCACGCCCATCCAATGACTGTTTGCTCATATATGATATTGAAGGTGTAGGTTCCCCTGCGGGCTCTGTGGGTTGTTGTAGCTTCATTGGAGAAGACTTGGATGACAGCTTTTTGGATACACTGGGGCCTAAATTTAAGAAGTTGGCAGATATCAGCCTGGGAAAAGGAGTTGAACCATATCCAGACCCTGATCCCTCTTGGCCACCTGACAGCACTGAACCGACCTGCCCTCTGCAGGGAACAGAGCCCATTGGTGGTGGACACCCACACATCTCCCCACATTTCGGCACCACCACCATCATTTCTGAGAGTACCTACTCTTCGGGACGTGGGGTACAGCACCCTATTCCTGATCCTCTGGGCTATGGTAATGTCACTTTAACTGAGTCTTACACCACCTTGGGCACTCTGAAGCCCTCTGTCCATGTTTACGATAACCAACATGCATCAAACGTGGTGGTGACAGAGAGGGTGGTCGGCCCAATCTCTGGTGTCAATCTGCATGGGATGTTAGAGATGCCTGACTTGAGAGATGGGTCAAATGTTATAGTGACAGAAAGGGTAATAACACCCGGTTCAAGCCTGCCCTCCACTTTGACCCTCCCTGATCCTAGAGAGTCTTCAAATGTAGTAGTGACAGAAAGAGTAATCCGGCCAAATTCCGGCCTAGTGGGCAATCTGAGTGTGCACTCCGATTTATCAAACACCCGCAATGTGATTGTGACAGAGAAGGTAGTTTCAGGCTAA

Related Sequences

bmy_18622T0 SequenceType object (3)

Length: 953 aa      View alignments
>bmy_18622T0
MNWPFFRTAAVLFIFLVVLEVNSEFQIQVRDYNTKNGTIKWHSVRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQQVTYRISGVGIDQPPYGIFVVNQKTGEINITSIVDREVTPFFIIYCRAVNSLGQDLERILELRVRVLDINDNPPVFSMSTFLGQIEENSNANTLVMMLNATDADEPNNLNSKIAFKIVRQEPPDSTMFIINRYTAEIRTRNNFLDREQYGQYSLFVRGSDRDGGADGMAAECECSIKILDVNDNIPYMEQSSYSISIEENALNSNLLQIRIIDLDEEFSANWMAVIFFISGNEGNWFDIEMNERTNVGTLKVIKPLDYEAMKNLQLSLGVRNKAEFHQSIMSQYKLTATAVSVTVLNVVEGSVFRPGSKTFTVTREMGQSYQLGDFIATDLDTGLPSTTVRYVMGSNPAGLIAIDSKTGIIILRNKVTVQQYEILKEKYQGTILSIDDALQRTSTGTIIIKLEDDEPSNNNTSTSTNGLTSSDVTTNTXKNDGTVSTNTFVVGHSTAFNLKNNDNVHFGPAGIGLLIMGFLVLGLVPFLLMFCDCGGVPGSGGRFKPVPECLDGAIHSWAVEGAQPKLVDLTNISAPQIPPNNADIIECLDNSGVYTNEYRGRKMQDLGGGEKTTALEVVDGVKTSGAPKICQEYSGTLRRSSMRECREGGLNMNFMENYFCQKAYAYADEDEARPSNDCLLIYDIEGVGSPAGSVGCCSFIGEDLDDSFLDTLGPKFKKLADISLGKGVEPYPDPDPSWPPDSTEPTCPLQGTEPIGGGHPHISPHFGTTTIISESTYSSGRGVQHPIPDPLGYGNVTLTESYTTLGTLKPSVHVYDNQHASNVVVTERVVGPISGVNLHGMLEMPDLRDGSNVIVTERVITPGSSLPSTLTLPDPRESSNVVVTERVIRPNSGLVGNLSVHSDLSNTRNVIVTEKVVSG*