Sequence details bmy_18717 (Coding sequence)

Part of scaffold_1840 (Scaffold)

For more information consult the page for scaffold_1840 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SCNN1B ENSTTRG00000005185 (Bottlenosed dolphin)

Gene Details

sodium channel, non-voltage-gated 1, beta subunit

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004897, Bottlenosed dolphin)

Protein Percentage 88.18%
cDNA percentage 90.97%
Ka/Ks Ratio 0.39659 (Ka = 0.0232, Ks = 0.0584)

SCNN1B ENSBTAG00000012290 (Cow)

Gene Details

amiloride-sensitive sodium channel subunit beta

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016301, Cow)

Protein Percentage 90.8%
cDNA percentage 92.28%
Ka/Ks Ratio 0.11684 (Ka = 0.0418, Ks = 0.3579)

SCNN1B  (Minke Whale)

Gene Details

sodium channel, non-voltage-gated 1, beta subunit

External Links

Gene match (Identifier: BACU018202, Minke Whale)

Protein Percentage 98.85%
cDNA percentage 99.18%
Ka/Ks Ratio 0.1936 (Ka = 0.0048, Ks = 0.0249)

Additional orthologs identified in other species via the OPTIC pipeline.

SCNN1B (Human)   Scnn1b (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1830 bp    Location:249153..278524   Strand:+
Raw sequence 
>bmy_18717
ATGCACATAAAGAAGTACCTGCTCAAGTGCCTGCACCGGCTGCAGAAGGGCCCCGGCTACACATACAAGGAGTTGCTGGTGTGGTACTGTGACAACACCAACACCCATGGCCCCAAACGCATCATCTGCGAGGGGCCCAAGAAGAAGGCCATGTGGTTCGTGCTCACCCTGCTCTTCACCTCCCTCGTCTGCTGGCAATGGGGTGTCTTCATCAGGACCTACCTGAGCTGGGAGGTCAGCGTCTCCCTCTCCATCGGCTTCAAGGCTATGGACTTTCCCGCCGTCACCATCTGCAACACCAGCCCCTTCCAGTACTCCAAAGTCAAGCATTTGCTGAAGGACCTGGATGAACTGATGGAGGCAGTCCTGGAGAGGATCCTGGGCCCTGAGCTCAGCCATGTCAACACCACCAGGGCCCTGAACCTCACCATCTGGAACTACATGCCCCTGGTCTTTATCAATGAGCAGAACCCCCATCACCCGGTGGTTCTTGACCTCTTTGAGGACAACTACAATGGCTCAGCAAGCAGCACCCCAGCACCAGAAAGGACCTGCAGTGCCCAAGGATGCAAAGTAGCCATGAGACTATGCAGCCACAATGGGACCACGTGCAATTTCCGGAACTTCAGCAGCGCCACCCAGGCCGTGACGGAGTGGTACACCCTGCAGGCCACCAACATCTTCGCACAGGTTCCAAAACAGGAGCTGGTGGCCATGGGCTACCCCGCCGAGCGGCTGATCCTGGCCTGCCTCTTCGGGGCGGAGCCCTGCAACTACAGGAACTTCACACCCATCTTCCACCCAGATTATGGCAACTGTTACATCTTCAACTGGGGCATGAGGGAGAAGGCCCTCCCTTCAGCCAACCCCGGAGCTGAGTTTGGCCTGAAGCTGATCCTGGACATGGGCCAGGAAGACTACGTGCCCTTCCTCACGTCCACAGCCGGTGCCCGGCTGATGCTTCACGAGCAGATGTCGTACCCCTTCATCAAAGAAGAGGGCATCTTCGCCATGTCGGGGATGGAGACTTCCATCGGGGTGCTGGTGGACAGGCTGGAGCGCAAGGGCGAGCCTTACAGCCAGTGCACCATGAACGGCTCCGACGTCCCCATCCGAAACCTCTACAGCGACTACAACACGACCTACTCCATCCAGGCCTGTATTCGCTCTTGCTTCCAAGACCACATGATCCATAACTGCAGCTGTGGCCACTACCTGTACCCGCTGCCCCGCGGAGAGAAATACTGCAACAACCAGGAGTTCCCAGACTGGGCCTATTGCTACTCGGCCCTGCGCATGAGCCTGGCGCAGAGGGAGACCTGCATCGATGTCTGTAAGGAGTCCTGCAATGACACTCAGTACAAGATGACCATCTCCATGGCCGTCTGGCCTTCTGAGGCCTCTGAGGACTGGATTTTCCATGTGTTGTCTCAGGAGCGGGACCAAAGCACCAATATCACCTTGAACAGGAAGGGAATTATCAAGCTCAACATCTACTTCCAAGAATACAACTATCGCACCATTGAGGAGTCAGCAGCCAATAACATTGTCTGGCTGCTCTCAAATCTGGGAGGACAGTTTGGCTTCTGGATGGGGGGCTCGGTGCTATGCCTCATCGAGTTCGGGGAGATCATCATCGACTTCGTGTGGATCACCATCATCAGGCTGGTGGCCCTCGCCAAGAGCCTGCGGCGGAGGCGGGCCCAGGCCTGCTACGATGGCCCACCGCCCACCGTGGCTGAGCTGGTGGAGGCCCACCCCAACTACGACTCCTTGCGTCTGCAGCCACTGGACGTCATCGAGTCTGACAATGAGGGCGATGCCATCTAG

Related Sequences

bmy_18717T0 Protein

Length: 610 aa      View alignments
>bmy_18717T0
MHIKKYLLKCLHRLQKGPGYTYKELLVWYCDNTNTHGPKRIICEGPKKKAMWFVLTLLFTSLVCWQWGVFIRTYLSWEVSVSLSIGFKAMDFPAVTICNTSPFQYSKVKHLLKDLDELMEAVLERILGPELSHVNTTRALNLTIWNYMPLVFINEQNPHHPVVLDLFEDNYNGSASSTPAPERTCSAQGCKVAMRLCSHNGTTCNFRNFSSATQAVTEWYTLQATNIFAQVPKQELVAMGYPAERLILACLFGAEPCNYRNFTPIFHPDYGNCYIFNWGMREKALPSANPGAEFGLKLILDMGQEDYVPFLTSTAGARLMLHEQMSYPFIKEEGIFAMSGMETSIGVLVDRLERKGEPYSQCTMNGSDVPIRNLYSDYNTTYSIQACIRSCFQDHMIHNCSCGHYLYPLPRGEKYCNNQEFPDWAYCYSALRMSLAQRETCIDVCKESCNDTQYKMTISMAVWPSEASEDWIFHVLSQERDQSTNITLNRKGIIKLNIYFQEYNYRTIEESAANNIVWLLSNLGGQFGFWMGGSVLCLIEFGEIIIDFVWITIIRLVALAKSLRRRRAQACYDGPPPTVAELVEAHPNYDSLRLQPLDVIESDNEGDAI*