Part of scaffold_1851 (Scaffold)

For more information consult the page for scaffold_1851 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ENSTTRG00000003617 (Bottlenosed dolphin)

Gene Details

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003392, Bottlenosed dolphin)

Protein Percentage 26.05%
cDNA percentage 35.12%
Ka/Ks Ratio 0.48604 (Ka = 0.798, Ks = 1.6418)

OPN1LW ENSBTAG00000020299 (Cow)

Gene Details

Long-wave-sensitive opsin 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027054, Cow)

Protein Percentage 62.5%
cDNA percentage 67.32%
Ka/Ks Ratio 0.17457 (Ka = 0.3115, Ks = 1.7846)

OPN1LW  (Minke Whale)

Gene Details

opsin 1 (cone pigments), long-wave-sensitive

External Links

Gene match (Identifier: BACU011424, Minke Whale)

Protein Percentage 62.89%
cDNA percentage 69.4%
Ka/Ks Ratio 0.31131 (Ka = 0.3173, Ks = 1.0192)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 810 bp    Location:11031..7492   Strand:-
>bmy_18742
ATGGGGAAGGAGCCGGGAAAGCAGGGGTTAGAGAATGAAACTGACCAAGAGATCCGCTGCTCCCCGGACCGGAAAACACTTTTTGGAGAATTAGGTTTTGCAGGGATCACCGGTCTCTGGTCCTTGGCCATCATTTCCTGGGAGAGGTGGATGGTGGTCTGCAAGCCCTTTGGCAACGTGAGATTTGATGCCAAGCTGGCCATCGCGGGCATTGCCTTCTCCTGGATCTGGGCTGCTGTGTGGACAGCTGCACCCATCTTTGGTTGGAGCAGGTACACCTGGGCTGTTGGTTACCAGTGTCCTTACCAGGCGGATCCTTTGGGGGAAGTCCCGAACTTCCAAGGAAACGGCTCAGGTACTGGCCCCACGGCCTGGAGACCTCGTGTGGCCCGGACGTGTTCAGCGGCAGCTCGTACCCTGGGGTGCAGTCTTACACGATCGTGTAAGCAGGAGAATGAGATCGGGGTCCTGAACACCGTGGCGAAGCAGCAGAAAGAATCCGAGTCCACCCAGAAGGCGGAGAAGGAGGTGACCCGCATGGTGATGGTGATGATCTTCGCGTACTGCCTCTGCTGGGGGCCCTACACATTCTTTGCATGCTTCGCCGCTGCCCACCCTGGCTACGCCTTCCACCCTCTGGTGGCCGCCCTGCCATCCTACTTCGCCAAAAGTGCCACTATCTACAACCCCGTTATCTATGTCTTTATGAACCGGCAGGTAAGTCACGCAGTTGACAGAGCAAACTGGAAGTGGACCCTGGAAGAGCCCAGTGATGGCTCCCACCTGGAAGCGTGTCTGTGGGAAGGCTGA

Related Sequences

bmy_18742T0 Protein

Length: 270 aa      View alignments
>bmy_18742T0
MGKEPGKQGLENETDQEIRCSPDRKTLFGELGFAGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAIAGIAFSWIWAAVWTAAPIFGWSRYTWAVGYQCPYQADPLGEVPNFQGNGSGTGPTAWRPRVARTCSAAARTLGCSLTRSCKQENEIGVLNTVAKQQKESESTQKAEKEVTRMVMVMIFAYCLCWGPYTFFACFAAAHPGYAFHPLVAALPSYFAKSATIYNPVIYVFMNRQVSHAVDRANWKWTLEEPSDGSHLEACLWEG*