Sequence detailsbmy_18748 (Coding sequence)

Part of scaffold_1851 (SequenceType object (1))

For more information consult the page for scaffold_1851 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HCFC1ENSTTRG00000007457 (Bottlenosed dolphin)

Gene Details

host cell factor C1 (VP16-accessory protein)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007057, Bottlenosed dolphin)

Protein Percentage 86.69%
cDNA percentage 86.14%
Ka/Ks Ratio 0.08972 (Ka = 0.0076, Ks = 0.0844)

HCFC1ENSBTAG00000011904 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000015793, Cow)

Protein Percentage 95.87%
cDNA percentage 91.99%
Ka/Ks Ratio 0.06089 (Ka = 0.021, Ks = 0.3441)

HCFC1 (Minke Whale)

Gene Details

host cell factor C1 (VP16-accessory protein)

External Links

Gene match (Identifier: BACU011421, Minke Whale)

Protein Percentage 98.12%
cDNA percentage 98.31%
Ka/Ks Ratio 0.21073 (Ka = 0.009, Ks = 0.0428)

Additional orthologs identified in other species via the OPTIC pipeline.

HCFC1 (Human)   Hcfc1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 6165 bp    Location:148217..168937   Strand:+
Raw sequence 
>bmy_18748
ATGGCTTCGGCCGTGTCACCCGCCAACTCGCCAGCAGTGCTCCTGCAGCCCCGCTGGAAGCGAGTGGTGGGCTGGTCGGGTCCAGTGCCCCGGCCCCGCCACGGCCACCGCGCCGTGGCCATCAAGGAGCTCATCGTGGTGTTTGGCGGCGGCAACGAGGGGATAGTGGACGAACTGCACGTGTACAACACGGCGACCAACCAGTGGTTCATCCCGGCCGTGAGAGGGGACATCCCTCCTGGATGTGCAGCCTATGGCTTCGTGTGCGATGGGACTCGCCTGCTGGTATTTGGCGGGATGGTGGAGTACGGCAAATACAGCAATGACCTCTACGAGCTCCAGGCAAGCCGGTGGGAGTGGAAGAGACTCAAAGCAAAGACGCCCAAAAACGGGCCCCCTCCGTGTCCTCGGCTCGGGCACAGCTTCTCCCTTGTGGGCAACAAATGTTACCTGTTTGGGGGTCTGGCCAATGATAGCGAGGACCCCAAGAACAACATTCCGAGGTACCTGAATGACTTATACATCCTGGAACTGCGGCCAGGCTCCGGAGTGGTAGCCTGGGACATTCCCATCACTTACGGCGTCCTTCCCCCACCCCGGGAGTCTCACACTGCAGTGGTCTACACCGAGAAAGACAACAAGAAGTCCAAGCTGGTGATCTATGGAGGGATGAGTGGCTGCAGGCTGGGGGACCTCTGGACCCTGGATATTGAGACGCTGACGTGGAATAAGCCCAGCCTCAGCGGGGTGGCACCTCTTCCTCGAAGTCTCCACTCGGCTACGACCATAGGAAACAAAATGTACGTGTTTGGTGGCTGGGTGCCTCTCGTCATGGATGACGTCAAAGTGGCCACACACGAGAAGGAGTGGAAGTGTACCAACACACTGGCTTGTCTCAACCTGGATACCATGGCCTGGGAGACGATCCTGATGGATACGCTGGAGGACAATATTCCCCGGGCCCGCGCCGGCCACTGTGCTGTAGCCATCAACACCCGCCTGTACATTTGGAGTGGGCGTGACGGCTACCGAAAGGCCTGGAACAACCAGGTCTGCTGCAAGGACCTCTGGTACCTGGAAACGGAAAAACCACCGCCCCCGGCCCGGGTACAGCTGGTACGAGCCAACACCAACTCCCTGGAGGTGAGCTGGGGGGCTGTGGCAACAGCCGACAGTTATCTTCTGCAGCTCCAGAAATATGACATTCCTGCCACGGCTGCTACTGCCACCTCCCCTACACCCAATCCAGTCCCATCTGTACCTGCCAACCCTCCCAAGAGCCCTGCCCCGGCAGCAGCCGCGCCTGCTGTGCAGCCACTGACCCAAGTAGGCATCACACTCCTGCCCCAGGCCGCCGCCGCACCCCCGACCACCACCACCACCATCCAGGTCTTGCCGACGGTGCCTGGCAGCTCGATCTCCGTGCCTGCCGCGGCCAGGACTCCAGGTGTCCCTGCTGTCCTCAAAGTGACCGGTCCTCAGGCTACAACAGGAACCCCGTTGGTCACCATGCGACCTGCCAGCCAGGCTGGGAAAGCCCCCGTCACCGTGACCTCTCTTCCCGCAGGCGTGCGAATGGTCGTGCCTACGCAGAGCGCCCAGGGGACGGTCATCGGCAGCAGCCCGCAGATGAGCGGCATGGCGGCGTTGGCAGCCGCGGCTGCTGCCACCCAGAAGATCCCTCCTTCCTCGGCACCCACGGTGCTGAGCGTCCCGGCCGGCACCACCATCGTCAAAACTGTGGCCGTGACGCCTGGCACCACCACCCTCCCAGCCACTGTGAAGGTGGCCTCCTCGCCAGTCATGGTGAGCAACCCAGCCACTCGAATGCTGAAGACTGCAGCCGCCCAGGTGGGGACGTCTGTCTCCTCTGCCGCGAACACGTCCACCCGCCCCATCATCACAGTACACAAGTCGGGGACTGTGACAGTGGCCCAGCAAGCACAGGTGGTGACCACAGTGGTGGGTGGGGTCACCAAGACCATCACCCTGGTGAAGAGCCCCATCTCTGTCCCAGGAGGCAGTGCTCTGATTTCCAATTTGGGTAAAGTGATGTCAGTGGTCCAGACCAAACCAGTTCAGACTTCTGCAGTCACAGGCCAGGCGTCTACAGGCCCGGTGACTCAGATCATCCAGACCAAAGGGCCCCTGCCAGCCGGGACTATCCTGAAGCTGGTGACATCAGCAGATGGGAAGCCCACCACCATCATCACTACCACACAGGCCAGCGGGGCAGGGACTAAGCCCACCATCCTGGGCATCAGCAGCGTGTCCCCCAGCACCACCAAGCCCGGCACGACCACTATCATCAAGACCATCCCCATGTCGGCCATCATCACGCAGGCGGGCGCCACGGGTGTGACCAGCAGTCCCGGCATCAAGTCCCCCATCACCATTATCACCACCAAGGTTATGACTTCCGGAACTGGAGCCCCCGCCAAAATCATCACTGCTGTTCCCAAAATCGCCACTGGCCACGGGCAGCAAGGAGTGACCCAGGTGGTGCTGAAGGGCGCCCCCGGCCAGCCGGGCACCATCCTCCGCACCGTGCCCATGGGCGGCGTCCGCCTGGTCACCCCCGTTACCGTCTCCGCTGTCAAGCCGGCTGTCACCACGTTGGTCGTGAAGGGCACAACAGGCGTCACGACCCTAGGCACCGTGACAGGCACCGTGTCCACCAGCCTCGCCGGGGCCGGGGGCCACAGCACCAGCGCCTCCCTGGCCACACCCATCACCACCTTGGGCACCATCGCCACCCTCTCGAGCCAGGTGATCAACCCCACTGCCATCACCGTGTCGGCGGCGCAGACCACGCTGACGGCGGCCGGCGGGCTCACCACCCCCACCATCACCATGCAGCCTGTCTCCCAGCCTACCCAGGTGACTCTGATCACAGCGCCCAGCGGGGTCGAGGCCCAGCCTGTGCACGACCTCCCCGTGTCCATTCTGGCCTCGCCTACTACAGAACAGCCCACGGCCACGGTCACCATCGCTGACTCAGGCCAGGGTGACGTGCAGCCCGGCACTGTGACACTGGTGTGCTCCAACCCGCCCTGCGAGACCCACGAGACGGGCACCACCAACACGGCCACCACCACCGTCGTGGCTAATCTCGGGGGGCACCCGCAGCCCACCCAAGTGCAGTTTGTCTGCGACAGACAAGAGGCAGCTGCTTCTCTCGTGAGCTCCACAGTGGGCCAGCAGAACGGCAGCGTGGTTCGCGTCTGTTCCAACCCGCCGTGCGAGACCCACGACACGGGCACCACCAACACGGCCACCACCGCCACCTCCAACATGGCTGGGCAGCACGGCTGCTCCAACCCGCCGTGTGAGACCCACGAGACGGGCACCACCAGCACAGCCACCACCGCCATGTCGGGCATCGGAGCCGGGCAGCGGCGAGACGTCCGGTACACCTGTGTGGCAAGCACCGTGCCCGCCGTGGTCCGGGTCAGCATGGCTGCCGGGGCGTCAGAGGGAGTCCAGGGCTCTGTCAAGCCCTCGTGCCAAACCCGCCAGACCAGCGCGACCAGCACCACCATGACTGTGATGGCCACTGGGGCCCCGTGCTCAGCTGGCCCGCTCTTCAGACCAAGCCTGGCCCTGGAGGCTGGCGGCCGTGGCGCCACGCTCGTGCAGCTGGGCCCTGTGAGCACCCAGGTCAGGCCTGGTGGTGAGGGTGGCCCCCTAGCTGGCCTGGGCCCGCTGGTGTCCGTGGGGCGCCAGCCGGAGGTGCATCACGCCCACACGACGTACACCGCCACCACGGCCCGCTCTACCGTGGGTGCCGGGGAACCCAGTGAGGTGCAGGGGATGCCCGCGCTTGGGTACGAGAGCTCGCCCGGCGCCGCTGTGACTGCGAAGGCCCTGGAGGCGCTGCTGTGCTCCTCGGCCACCGTGACGCAGGTCTGCTCCAACCCCCCGTGCGAGACCCACGAGACGGGCACCACCCCTACGCCCACCACCGCCACGTCCACCGGGGGTGCGGGCCAGCCAGAGGGTGGGCAGCAGCCCCCCGCCGGCCGCCCCTGTGAGACGCACCAGACGGCTTCCACCGGTACCACCATGTCAGTCAGCATGGGCGCCCTGCTCCCCGACGCCGCGCCCTCCCACAGAACCCTGGAGTCCGGCTTGGAGGGGGCGGCACCGCCCACAGTTACCCCCCAGGCTGGAGCTTCGTTGCTGGCTCCTTTCCCGACGCAGAGGGTGTGCTCCAACCCCCCCTGTGAGACCCACGAGACAGGCACCACGCACACGGCCACCACTGTCACCTCCAACATGAGTTCCAACCAAGACCCCCCGCCGCCTCCCAGCGACCAGGGAGAGGTGGAGAGCACCCAGGGCGACGGCGTGAACATCCCCAGTTCCAGTCCCATCACGACAACGGTGTCCTCCACGCTGACACGGGCCGTGACCACTGTGACACAGTCCACACCGGTCCCGGGCCCTTCGGTGCCGAAGATCTCATCAGTGACCGAGACTACCCCAGGGGCTCTGACCACCGAAGTCCCCATCCCGGCCACGATAACAGTGACCATAGCCAACACAGAAACTTCTGACATGCCCTTCTCTGCTGTTGACATCCTGCAGCCCCCAGAGGAGCTCCAGGCCTCGCCAGGGCCTCGCCAGCAGCTTCCGCCACGGCAACTCCTGCAGCCTGCCTCCGCACCCCTGATGGGGGAGTCCGCCGAGGTCCTGTCAGCCTCCCAGGCCCCCGAGCTCCAGGCCGCCGTGGATCTGAGCAGTACAGGGGACCCGTCTTCAGGCCAGGAGCCTGCCAGCTCAGCCATGGTAGCCACTGTGGTGGTCCAGCCGCCCCCGCCCACGCAGTCCGAAGTAGACCAGTTGTCACTGCCCCAAGAGCTGATGGCCGAGGCCCAGGCGGGCACCACCACCCTCATGGTAACGGGGCTCACACCCGAGGAGCTGGCGGTGACTGCTGCCGCTGAAGCGGCCGCCCAGGCCGCGGCCACAGAGGAAGCCCAGGCCCTGGCCATCCAGGCCGTGCTCCAGGCCGCGCAGCAGGCCGTCATGGGCACCGGGGAGCCCATGGACACGTCGGAGGCGGCGGCCGCTGTGACGCAGGCGGAGCTGAGCCACTTGTCAGCCGAGGGCCAGGAGGGCCAGGCCACCACCATCCCCATCGTGCTGACACAGCAGGAGCTGGCCGCCCTGGTGCAGCAGCAGCAGCTCCAGGAGGCGCAGGCGCAGCAGCAGCAGCACCACCTCCCCACGGAGGCGCTGGCCCCCGCCGACAGCCTCAACGACCCGGCCATCGAGAGCAACTGCCTCGGCGAGCTGGCCGGGGCTGCGCCCAGCACCGTGGCCCTGCTGCCCTCCACGGCCACTGACAGCCTGGCTCCGTCCAACACGTTTGTGGCCCCCCAGCCAGTCGTGGTCGCCAGTCCCGCGAAGCTGCAGGCCGCGGCTACCCTGACGGAAGTGGCCAATGGCATCGAGTCCCTGGGCGTAAAGCCAGACCTACCACCCCCGCCCAGCAAAGCCCCCGTGAAGAAAGAGAACCAGTGGTTTGATGTGGGGGTCATTAAAGGCACCAACGTAATGGTGACACACTATTTCCTGCCACCCGACGACGCTGCCCCGTCGGATGACGACTCGGGCACGGTGCCCGACTACAACCAGCTGAAGAAGCAGGAGCTGCAGCCTGGCACTGCCTACAAGTTCCGCGTCGCCGGGATCAACGCCTGCGGCCGGGGGCCCTTCAGCGAGATCTCAGCCTTTAAGACGTGTCTGCCTGGCTTCCCGGGGGCCCCCTGTGCCATTAAAATCAGCAAAAGTCCAGACGGCGCTCACCTCACCTGGGAGCCGCCCTCTGTGACCTCCGGCAAGATCATCGAGTACTCGGTGTACCTGGCCATCCAGAGCTCGCAGGCTGGGGGCGAGCCCAAGAGCTCCACCCCGGCGCAGCTGGCCTTCATGCGGGTGTACTGTGGGCCCAGCCCCTCCTGCCTCGTGCAGTCCTCCAGCCTCTCCAACGCCCACATCGACTACACCACCAAGCCCGCCATCATCTTCCGCATCGCTGCCCGCAACGAGAAGGGCTACGGCCCAGCCACCCAAGTCAGGTGGTTACAAGAAACCAGTAAAGACAGCTCTGGCGCCAAGCCGGCCAGCAAGCGGCCCATGTCCTCTCCAGAAATGTAA

Related Sequences

bmy_18748T0 SequenceType object (3)

Length: 2055 aa      View alignments
>bmy_18748T0
MASAVSPANSPAVLLQPRWKRVVGWSGPVPRPRHGHRAVAIKELIVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLWYLETEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLTQVGITLLPQAAAAPPTTTTTIQVLPTVPGSSISVPAAARTPGVPAVLKVTGPQATTGTPLVTMRPASQAGKAPVTVTSLPAGVRMVVPTQSAQGTVIGSSPQMSGMAALAAAAAATQKIPPSSAPTVLSVPAGTTIVKTVAVTPGTTTLPATVKVASSPVMVSNPATRMLKTAAAQVGTSVSSAANTSTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPISVPGGSALISNLGKVMSVVQTKPVQTSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSADGKPTTIITTTQASGAGTKPTILGISSVSPSTTKPGTTTIIKTIPMSAIITQAGATGVTSSPGIKSPITIITTKVMTSGTGAPAKIITAVPKIATGHGQQGVTQVVLKGAPGQPGTILRTVPMGGVRLVTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHSTSASLATPITTLGTIATLSSQVINPTAITVSAAQTTLTAAGGLTTPTITMQPVSQPTQVTLITAPSGVEAQPVHDLPVSILASPTTEQPTATVTIADSGQGDVQPGTVTLVCSNPPCETHETGTTNTATTTVVANLGGHPQPTQVQFVCDRQEAAASLVSSTVGQQNGSVVRVCSNPPCETHDTGTTNTATTATSNMAGQHGCSNPPCETHETGTTSTATTAMSGIGAGQRRDVRYTCVASTVPAVVRVSMAAGASEGVQGSVKPSCQTRQTSATSTTMTVMATGAPCSAGPLFRPSLALEAGGRGATLVQLGPVSTQVRPGGEGGPLAGLGPLVSVGRQPEVHHAHTTYTATTARSTVGAGEPSEVQGMPALGYESSPGAAVTAKALEALLCSSATVTQVCSNPPCETHETGTTPTPTTATSTGGAGQPEGGQQPPAGRPCETHQTASTGTTMSVSMGALLPDAAPSHRTLESGLEGAAPPTVTPQAGASLLAPFPTQRVCSNPPCETHETGTTHTATTVTSNMSSNQDPPPPPSDQGEVESTQGDGVNIPSSSPITTTVSSTLTRAVTTVTQSTPVPGPSVPKISSVTETTPGALTTEVPIPATITVTIANTETSDMPFSAVDILQPPEELQASPGPRQQLPPRQLLQPASAPLMGESAEVLSASQAPELQAAVDLSSTGDPSSGQEPASSAMVATVVVQPPPPTQSEVDQLSLPQELMAEAQAGTTTLMVTGLTPEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMGTGEPMDTSEAAAAVTQAELSHLSAEGQEGQATTIPIVLTQQELAALVQQQQLQEAQAQQQQHHLPTEALAPADSLNDPAIESNCLGELAGAAPSTVALLPSTATDSLAPSNTFVAPQPVVVASPAKLQAAATLTEVANGIESLGVKPDLPPPPSKAPVKKENQWFDVGVIKGTNVMVTHYFLPPDDAAPSDDDSGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQAGGEPKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGAKPASKRPMSSPEM*