Sequence details bmy_18754 (Coding sequence)

Part of scaffold_1851 (Scaffold)

For more information consult the page for scaffold_1851 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

L1CAM ENSTTRG00000007451 (Bottlenosed dolphin)

Gene Details

L1 cell adhesion molecule

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007050, Bottlenosed dolphin)

Protein Percentage 77.24%
cDNA percentage 78.15%
Ka/Ks Ratio 0.1457 (Ka = 0.0225, Ks = 0.1544)

L1CAM ENSBTAG00000013462 (Cow)

Gene Details

neural cell adhesion molecule L1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017906, Cow)

Protein Percentage 93.5%
cDNA percentage 91.91%
Ka/Ks Ratio 0.06943 (Ka = 0.031, Ks = 0.4461)

L1CAM  (Minke Whale)

Gene Details

L1 cell adhesion molecule

External Links

Gene match (Identifier: BACU011419, Minke Whale)

Protein Percentage 94.32%
cDNA percentage 95.88%
Ka/Ks Ratio 0.31287 (Ka = 0.0331, Ks = 0.1059)

Additional orthologs identified in other species via the OPTIC pipeline.

L1CAM (Human)   L1cam (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3465 bp    Location:227617..252310   Strand:+
Raw sequence 
>bmy_18754
ATGGCCGTGGCGCTGCGGTACTTGTGGCCTCTCCTCCTGTGCAGCCCCTGCCTGCTCATCCAGATCCCCGAGGAATATGAAGGACACCACGTGATGGAGCCCCCTGTCATCACGGAACAGTCCCCACGGCGCGTGGTCGTCTTCCCCACAGATGATATCAGCCTCAAGTGTGAGGCCAGCGGCACACCCGAAGTGCAGTTCCGCTGGACTCGGGACGGTGTCCTCTTCAAACCCAAGGAGGAGCTGGGTGTGACCGTGAACCAGGCCCCCCACTCTGGCTCCTTCACCATCACAGGCAACAACAGCAACTTCGCCCAGAGCTTTCAGGGCGCCTATCGCTGCTTTGCCAGCAACAGGCTGGGCACCGCCATGTCCCACGAGATCCAGCTCATGGCCGAGGGTACCCCCAAGTGGCCAAAGGAGACAGTGAGACCTGTCGAGGTGGAGGAAGGGGAGTCGGTGATTCTGCCTTGCCACCCGCCCCCCAGTGCAGAGCCGCTCCGGATCTACTGGATGAACAGCAAGATCTTGCACATCAAGCAGGATGAGCGGGTGACCATGGGCCAGAACGGCAACCTCTACTTCGCCAATGTGCTTACCTCGGACAACCACTCGGACTACATCTGCCATGCCCACTTCCCTGGCACCCGGACCATCATTCAAAAGGAACCCATTGACCTCCGGGTCAAGGCCACCAACAGCATGATGGACAGAAAGCCGCGCCTGCTCTTCCCCACCAACTCCAGCAGCCACCTGGTGGCCCTGCAGGGGCAGCCGCTGGTCCTGGAGTGCATCGCCGAGGGCTTCCCCACGCCCACCATCAAATGGCTGCGCCCGAGCGGCCCCATGCCAGCTGACCGAGTCACCTACCAGAACCACAACAAGACCCTGCAGCTGCTGAACGTGGGTGAGGAGGACGACGGCGAGTATCGCTGCCTGGCTGAGAACTCCCTGGGCAGTGACCGGCATGCCTACTACGTCACCGTGGAGGCGGCCCCGTACTGGCTGCACAAGCCCCAGAGCCATCTGTACGGGCCGGGAGAGACTGCCCGCCTGGACTGCCAAGTGCAGGGCAGGCCCCAACCAGAGGTCACCTGGAGAATCAATGGGATCCCTGTGGAGGAACTGGCCAAGGACCAGAAGTACCGGATCCACCATGGAGCCCTGATCCTGAGCAACGTGCAGCCCAGTGACACGATGGTGACCCAGTGTGAGGCCCGTAACCGGCACGGGCTCCTGCTGGCCAATGCCTACATTTATGTTGTCGAGCTGCCGGCCAAGATCCTGACCCCAGACAACGAGACGTACATGGCGGTCCAGGGCAGCACCGCCTACCTTCTGTGTAAGGCCTTTGGAGCCCCTGTGCCCAGCGTCCAGTGGCTGGACGGGGAAGGAAAGACGGTGCTTCAGGACGAGCGCTTCTTCCCCTACACCAACGGGACCCTGGGCATCCGAGACCTCCAGGCCAATGACACCGGCCACTACTTCTGCCAGGCTGCCAACGACCAAAACAACGTGACCATTGTGGCTAACCTGCAGGTCAAAGATGCCACTCAGATCACGCAGGGGCCCCGCAGCGCGATCGAGAAGAAAGGCTCGCGAGTGACGTTCACGTGCCAGGCCTCCTTTGACCCCTCCTTGCAGCACAGCATCACCTGGCGCGGGGATGGTCGCGACCTCCAGGAGCTCGGGGACAGTGACAAGTACTTCATAGAGGACGGGCGCCTGGTCATCCACACCCTGGACTACAGCGACCAGGGCAACTACACCTGCGTGGCCAGCACCAAGCTGGACGCGGTGGAGAGCAGGGCAGAGCTCCTGGTGGTGGGGAGCCCCGGCCCCGCGCCTCGGCTGGAGCTGTCTGACCGTCACCTGCTGAAGTGGAGCCAGGTGCGCCTGTCCTGGAGCCCCGCTGACGACCACAACGCCCCCATCGAGAAGTATGACATTGAATTCGAGGACAAGGAGATGGCGCCCGAGAAGTGGCACAGTCTGGGCAAGGTGCCCGGGAACCAGACCTCCACCACCCTCAAGCTGTCGCCTTATGTCCACTACACCTTTAGAGTTACTGCCATCAACAAATACGGCCCTGGGGAGCCCAGCCCAGCCTCGGAGACTGTGGTCACGCCAGAAGCAGCCCCGGAGAAGAACCCCGTGGACGTGAAGGGGGAAGGAAACGAGACCAACAACATGGTCATCACTTGGAAGCCGCTGCGGTGGATGGAGTGGAACGCCCCCCAGGTTCAGTATCGCGTGCAGTGGCGCCCTCAGAAGACGCAGGGGGCCTGGCAGGAGCAGATCGTGAGCAGCCCCTTCCTGGTGGTGTCCAACACTCCCACCTTTGTGCCCTATGAGATCAAGGTCCAGGCCGTCAACAGCCAGGGCAAGGGCCCGGAGCCCCAGATCACCGTCGGCTACTCTGGGGAGGATTACCCCCAGGCAAGCCCTGAGCTGGAAGGCATCAAGATCCTCAATTCGAGCACGGTGCTGGTCAGGTGGTGGCCTGTGGACCCAGCCCAGGTCAAGGGCCACCTCCGGGGATACAATGTGACGTACTGGTGGGAGGGCAGTCAGAGGAAGCACAGCAAGAGGCATGTCCACAAAGGCCACGTGGTGGTGCCTGCCAACAGCACCAGCAGCATCCTGGGAGGCCTGCGGCCCTACAGCTCCTACCACGTGGAGGTGCGGGCCTTTAACGGCCGGGGACTGGGGCCCGCCAGCGAGATGACCTTCAGCACCCCCGAGGGAGGGACCCCGGATTTTGGCAACATCTCGGCCATGGCTGGCGAGAATTACAGCGTGGTCTCCTGGGTCCCCAAGGAGGGCCAGTGCAACTTCGGGTTCCAGATCTGGTTCAAGGCCCTGGGGGATGAGAAGCTGGGCGCTCATCTCCCGCCGCAGTACGTCAGCTACAACCAGAGCTCCTACACGCAGTGGGACCTGCAGCCTGACACCGACTACGAGATACACTTGCTCAAGGAGCGGGCGCTCCTGCACCAGATGGCCGTGAGGACCAACGGCACTGGCCGAGTGAGACTCCCTCCCGCCGGCTTTGCCACGGAGGGCTGGTTCATCGGCTTCGTCAGCGCCATCATCGTCCTGCTTCTCATCTTCCTCATCCTTTGCTTTATCAAGCGCAGCAAGGGTGGCAAGTACTCAGTGAAGGACAAGGAGGACACCCAGGTGGACTCGGAGGCCCGGCCCATGAAGGACGAAACCTTCGGCGAGTACAGTGACAACGAGGAGAAGGCCTTCGGCAGCAGCCAGCCATCCCTCAACGGAGACATCAAGCCCCTGGGCAGTGATGACAGCCTGGCCGACTACGGGGGCAGCGTGGACGTCCAGTTCAACGAGGACGGCTCCTTCATCGGCCAGTACAGTGGCAAGAAGGAGAAGGAGGCGGCAGGAGGCAACGACAGCTCAGGGGCCGCCTCCCCCATCAACCCTGCGGGGACCCTGGAGTAG

Related Sequences

bmy_18754T0 Protein

Length: 1155 aa      View alignments
>bmy_18754T0
MAVALRYLWPLLLCSPCLLIQIPEEYEGHHVMEPPVITEQSPRRVVVFPTDDISLKCEASGTPEVQFRWTRDGVLFKPKEELGVTVNQAPHSGSFTITGNNSNFAQSFQGAYRCFASNRLGTAMSHEIQLMAEGTPKWPKETVRPVEVEEGESVILPCHPPPSAEPLRIYWMNSKILHIKQDERVTMGQNGNLYFANVLTSDNHSDYICHAHFPGTRTIIQKEPIDLRVKATNSMMDRKPRLLFPTNSSSHLVALQGQPLVLECIAEGFPTPTIKWLRPSGPMPADRVTYQNHNKTLQLLNVGEEDDGEYRCLAENSLGSDRHAYYVTVEAAPYWLHKPQSHLYGPGETARLDCQVQGRPQPEVTWRINGIPVEELAKDQKYRIHHGALILSNVQPSDTMVTQCEARNRHGLLLANAYIYVVELPAKILTPDNETYMAVQGSTAYLLCKAFGAPVPSVQWLDGEGKTVLQDERFFPYTNGTLGIRDLQANDTGHYFCQAANDQNNVTIVANLQVKDATQITQGPRSAIEKKGSRVTFTCQASFDPSLQHSITWRGDGRDLQELGDSDKYFIEDGRLVIHTLDYSDQGNYTCVASTKLDAVESRAELLVVGSPGPAPRLELSDRHLLKWSQVRLSWSPADDHNAPIEKYDIEFEDKEMAPEKWHSLGKVPGNQTSTTLKLSPYVHYTFRVTAINKYGPGEPSPASETVVTPEAAPEKNPVDVKGEGNETNNMVITWKPLRWMEWNAPQVQYRVQWRPQKTQGAWQEQIVSSPFLVVSNTPTFVPYEIKVQAVNSQGKGPEPQITVGYSGEDYPQASPELEGIKILNSSTVLVRWWPVDPAQVKGHLRGYNVTYWWEGSQRKHSKRHVHKGHVVVPANSTSSILGGLRPYSSYHVEVRAFNGRGLGPASEMTFSTPEGGTPDFGNISAMAGENYSVVSWVPKEGQCNFGFQIWFKALGDEKLGAHLPPQYVSYNQSSYTQWDLQPDTDYEIHLLKERALLHQMAVRTNGTGRVRLPPAGFATEGWFIGFVSAIIVLLLIFLILCFIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYSDNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAAGGNDSSGAASPINPAGTLE*