Part of scaffold_1857 (Scaffold)

For more information consult the page for scaffold_1857 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VDR ENSTTRG00000012578 (Bottlenosed dolphin)

Gene Details

vitamin D (1,25- dihydroxyvitamin D3) receptor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011935, Bottlenosed dolphin)

Protein Percentage 96.54%
cDNA percentage 97.43%
Ka/Ks Ratio 0.20667 (Ka = 0.0155, Ks = 0.0751)

BT.61412 ENSBTAG00000016414 (Cow)

Gene Details

Vitamin D3 receptor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000021832, Cow)

Protein Percentage 92.25%
cDNA percentage 92.69%
Ka/Ks Ratio 0.10557 (Ka = 0.0353, Ks = 0.3348)

VDR  (Minke Whale)

Gene Details

vitamin D (1,25- dihydroxyvitamin D3) receptor

External Links

Gene match (Identifier: BACU007961, Minke Whale)

Protein Percentage 99.2%
cDNA percentage 98.85%
Ka/Ks Ratio 0.07452 (Ka = 0.0033, Ks = 0.0447)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1131 bp    Location:88552..109410   Strand:+
>bmy_18802
ATGAAGCGGAAGGCACTGTTCACCTGTCCCTTCAATGGAGACTGCCGCATCACCAAGGACAACCGCCGCCACTGCCAGGCCTGCCGGCTCAAGCGCTGTGTGGACATCGGCATGATGAAGGAGTTCATCCTGACTGATGAAGAGGTGCAGCGGAAGCGGGAGATGATCCTCAAGAGGAAGGAAGAGGAGGCCTTGAAGGACAGCCTGCGGCCGAAGCTGTCCGAGGAGCAGCAACACATCATCGCCATCCTGCTGGACGCCCACCACAAGACCTATGACCCCACCTACGCCGACTTCAGCCAGTTCCGGCCTCCGGTTCGAGAGGGTGGGAATGAAGGGAAGCATCCCTCAGGGCCTTGGTTGATACACACGCCCAGCTTCTCTGGAAACTCATCGTCCTCCTGCTCAGATCGCTACACCTCCTCTCCAGATACGATGGAGCCAACCGGCTTCTCCAACCTGGATCTGAGTGAAGAAGACTCTGATGACCCTTCTGTGACCTTGGACCTGTCCCAGCTCTCCATGCTGCCCCACCTGGCTGACCTGGTCAGTTACAGTATCCAAAAGGTCATCGGCTTTGCCAAGATGATCCCAGGGTTCAGAGACCTCACCCCTGAGGACCAGATCGTGCTGCTGAAGTCGAGTGCCATTGARGTCATCATGCTGCGCTCCAACCAGTCCTTCACCATGGACGACATGTCCTGGACCTGCGGCAGCCCGGACTTCAAGTACCAAGTCAGTGATGTGACCAAAGCCGGACACAGCCTGGAACTGATTGAGCCCCTCATCAAGTTCCAGGTGGGGCTGAAGAAGCTGAACTTGCATGAGGAGGAGCACGTGCTGCTCATGGCCATCTGCATTGTCTCCCCAGACCGTCCCGGGGTGCAGGACGCTGCGCTGGTCGAGGCCATCCAGGACCGCCTGTCCAACACGCTGCAGACCTACATCCGCTGCCGCCACCCACCCCCAGGCAGCCACCTGCTCTACGCCAAGATGATCCAGAAGCTAGCGGACCTGCGTAGCCTGAACGAGGAGCACTCCAAGCAGTACCGCTCCCTCTCCTTCCAGCCCGAGTGCAGCATGAAGCTCACGCCCCTTGTGCTCGAGGTGTTTGGCAACGAGATCTCCTGA

Related Sequences

bmy_18802T0 Protein

Length: 377 aa      View alignments
>bmy_18802T0
MKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFSQFRPPVREGGNEGKHPSGPWLIHTPSFSGNSSSSCSDRYTSSPDTMEPTGFSNLDLSEEDSDDPSVTLDLSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTPEDQIVLLKSSAIEVIMLRSNQSFTMDDMSWTCGSPDFKYQVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALVEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRSLSFQPECSMKLTPLVLEVFGNEIS*