Sequence detailsbmy_18807 (Coding sequence)

Part of scaffold_1857 (SequenceType object (1))

For more information consult the page for scaffold_1857 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RPAP3ENSTTRG00000012568 (Bottlenosed dolphin)

Gene Details

RNA polymerase II associated protein 3

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000011928, Bottlenosed dolphin)

Protein Percentage 95.14%
cDNA percentage 96.0%
Ka/Ks Ratio 0.34564 (Ka = 0.012, Ks = 0.0348)

RPAP3ENSBTAG00000018690 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000024878, Cow)

Protein Percentage 93.03%
cDNA percentage 94.65%
Ka/Ks Ratio 0.23774 (Ka = 0.0337, Ks = 0.1419)

RPAP3 (Minke Whale)

Gene Details

RNA polymerase II associated protein 3

External Links

Gene match (Identifier: BACU007957, Minke Whale)

Protein Percentage 98.54%
cDNA percentage 99.19%
Ka/Ks Ratio 0.52215 (Ka = 0.0067, Ks = 0.0128)

Additional orthologs identified in other species via the OPTIC pipeline.

RPAP3 (Human)   Rpap3 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1854 bp    Location:252087..294203   Strand:+
Raw sequence 
>bmy_18807
ATGACTTCAGCAAGTAAAGCAATTGAATTACAACTACAAGTGAAACAAAATGCAGAAGAGTTACAAGACTTTATGAGGGATTTAGAAAACTGGGAAAAAGATATTAAACAAAAGGATATGGAACTTAGAAGACAGAATGGTGTTCCTGAAGAGAATTTACCTCCTATTCGAAATGGGAATCTTAGGAAAAAGAAGAAAGGCAAAGTTAAAGAGTCATCTAAAAAAACCAAAGATGAAAACACAAAAATCAGGATAAAATCTTATGATTATGAGGCATGGGCAAAACTTGATGTGGACAGTATCCTTGATGAGCTTGACAAAGAAGAGAGTACCCATGATTCTGTGTCTCAAGAATCGGAGTCAGAAGAAGATGGGATTCATGTAGATTCACAAAAGGCTCTTGCTCTAAAAGAAAAGGGCAATAAATACTTCAAACAAGGAAAATATGATGAAGCGATTGAATGCTACACCAAAGGCATGGGTGCTGATCCATATAATCCTGTGTTGCCAACAAACAGAGCATCAGCATACTTTAGACTGAAAAAATTTGCTGTTGCTGAGTCTGATTGTAATTTAGCAGTTGCCTTGAATAGAAGTTATACAAAGGCTTATGCAAGACGAGGTGCTGCTCGATTTGCTTTGCAAAAATTAGAGGATGCCAAAAAAGATTATGAAAAAGTATTAGAACTGGAACCCAATAACTTTGAAGCTACAAATGAACTCAGGAAAATTAATCAGGCTTTAACTTCCAAAGAAAACTCATATCCAGAGGAAGCTGATACAATGATTAAGTCAGCTGAAGGAGAGAAAAAACAAATTGAAGAGCAACAGAATAAACAGCAGGCCATTTCAGAGAAAGATCGGGGGAATGCATTTTTCAAAGAGGGGAAATATGAAAGAGCAATCGAATGCTATACTCGAGGGATAGCAGCAGATGGCGCTAATGCCCTTCTTCCAGCTAACAGAGCAATGGCCTATCTGAAGATTCAGAAGTATGAAGAGGCTGAAAAAGACTGCACACAAGCTATTTTATTAGATGGCTCATATTCTAAAGCTTTTGCCAGAAGGGGAACTGCAAGAACATTTTTGGGAAAGCTCAATGAGGCCAAACAAGATTTTGAAACTGTTTTACTTCTGGAACCTGGAAATAAGCAGGCAGTGACTGAACTTTCCAAAATTAAAAAGGAATTAATTGAGAAAGGACACTGGGATGATGTCTTTCTTGATTCTACTCAAAGGCAAAACGAGATAAAACCCATTGATAATCCACCTCATCTTGGATCAACTAAACCACTCAAGAAGCTTATTATTGAAGAAACTGGTAATTTGATACAGACTGTTGACGTGCCAGATAGCACTACTGCTGCTGCTGCTCCAGAGCGTAATCCTATTCGTCCAGCAAAGGTAACAGCAGCCACTGGCACAAGTAAGAAGAACTCAAGCCAAGATGACCTTTTGCCCACAAGTGATATCCCAAAAGCAAAAGTATTGAAAATAGAAGAAATCAGTGATAATTCAGCTCAGCAACAACTGAAAAATTCTCCAGATATGTTGTATCAATATTTGAAGCAAATTGAACCATCCTTGTATCCCAAGCTGTTTCAGAAAAATCTAGATCCAGATGTATTCAACCATATCATTAAAATTCTGCATGACTTTTACATTGAGAAAGAAAAGCCATCACTCATCTTTGAAATCTTACAAAGACTTTCTGAACTAAGAAGGTTTGATATGGCAGTGATGTTTATGTCAGAACCTGAGAAGAAAATTGCACGTGTATTATTCAATCACATAGGCAAATCAGGATTGAATGATAGTTCTGTTGAAGAACTCAAGAAAAGATACGGTGGTTGA

Related Sequences

bmy_18807T0 SequenceType object (3)

Length: 618 aa      View alignments
>bmy_18807T0
MTSASKAIELQLQVKQNAEELQDFMRDLENWEKDIKQKDMELRRQNGVPEENLPPIRNGNLRKKKKGKVKESSKKTKDENTKIRIKSYDYEAWAKLDVDSILDELDKEESTHDSVSQESESEEDGIHVDSQKALALKEKGNKYFKQGKYDEAIECYTKGMGADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYARRGAARFALQKLEDAKKDYEKVLELEPNNFEATNELRKINQALTSKENSYPEEADTMIKSAEGEKKQIEEQQNKQQAISEKDRGNAFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNEIKPIDNPPHLGSTKPLKKLIIEETGNLIQTVDVPDSTTAAAAPERNPIRPAKVTAATGTSKKNSSQDDLLPTSDIPKAKVLKIEEISDNSAQQQLKNSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNHIIKILHDFYIEKEKPSLIFEILQRLSELRRFDMAVMFMSEPEKKIARVLFNHIGKSGLNDSSVEELKKRYGG*