Part of scaffold_1868 (Scaffold)

For more information consult the page for scaffold_1868 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NDC1 ENSTTRG00000009010 (Bottlenosed dolphin)

Gene Details

NDC1 transmembrane nucleoporin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008582, Bottlenosed dolphin)

Protein Percentage 90.0%
cDNA percentage 91.35%
Ka/Ks Ratio 0.59852 (Ka = 0.0146, Ks = 0.0244)

TMEM48 ENSBTAG00000006625 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000040833, Cow)

Protein Percentage 93.91%
cDNA percentage 93.91%
Ka/Ks Ratio 0.17399 (Ka = 0.0296, Ks = 0.1703)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2016 bp    Location:159208..113619   Strand:-
>bmy_18827
ATGGGGCCCTCGGGGGGCCTTCCTCCCTTTGAACTGCGGTGGCGGGTGGGCTCACTGTATCCTGCACCTTTCAGAGTAGGGGCCGCCATCACCATGGTCACTGCTGCGAGTCGGCCGTGCGCCGGCGGGCCGCGGGACATCCTGTGGCGCGTTTTGGGCTGGAGGATAGTTACAAGTATTGTCTGGTCAGTGCTGCTTCTGCCCATCTGTACCACAGTATTTGTCATCTTCAGCAGCATTGATTTATTTCATCCTATACAGTGGCTGTCTGATTCTTTCAGTGATCTGTATAGTTCCTATATAATCTTTTACCTTCTGCTGCTGTCAGTGGTAATAGTAATAATAAGTATTTTCAATGTGGAGTTCTATACAGTTGTGCCTTCCATTCCCTGCTCGAGACTGGCACTGATAGGGAAGATCATTCATCCTCAGCAGCTCATGCACTCCTTTATTCATGCTGCAATGGGAATGATGATGGCTTGGTGTGCTGCGGTGATAACCAAGGGTCAATACAGTTTTCTTGTGGTTCCCTGCTCTGCTACTGAGAGCTTAGATAGCCCTGCTGCACAAACTTGCTTAAATGAGTATCACCTTTTTTTTCTGCTGGCTGGAGCATTTATGGGCTGTAGCTATAGCCTCCTGTATTTTATTAACAACATGAACTATCTTCCATTTCCCATCATACAGCAATACAAGTTCTTGCGCTTCAGGAGGTCTCTGCTTTTGCTAGTTAAGCATAGTTGTGTGGAATCGCTGTTCCTGCTTAGAAATTTCTGCATTGTGTATTATTTTCTTGGCCACATTCCCAAAGCTTGGATTAGCACTGCTATGGACCTTCAGTTAGATGAGCAGTTTCATAGGCCTCTTGACACTGTGAGTGGCCTCTTGAATCTCTCATTACTCTACCATGTCTGGCTCTGTGGTGTCTTTGTCCTGATGACTTGGTACATCTCGTGGATACTCTTCAAAATCTATGCCACAGAGGCTCATCTGTTCCCTGTTCAACCACCATTTTCAGAAGAGTCATATGAATGCCTCCCGAAAGTTTTAAACAGCAATCCTCCCCTCATCATAAAGTATTTGGCCTTGCAGGACCTGATGTTGCTTTCTCAATATTCTCCTTCACGAAGACAAGAAGTTTTTAGCCTTAGCCAGCCAGGTGGACATCCCCACAGTTGGACAGCCATTTCAAGAGAGTGTTTGAATCTTTTAAATGATATGACTCAGAAACTTGTACTCTATCAAGAAGCTGCTGCTACAAATGGGAGAGTGATGTCTTCATCCTACCCAGTGGAACCTAAGAAATTGAATTCTCCAGAAGAAACTACTTTTCACACCCCAAAATCTAGCCAGATGCCTCGGCCTTCAATGCCATCATTAATTAAGACGTCGCTGTTCTCCTCAAAATTGTCTGCACCTGATGTTGCAAGTCCCCTGGCGACCCCATTTGGCTCTAGTGTAGTGAATCGGATGGCTGGGATTTTTGATGTAAGCACGTGCTATGGGTCACCTCAGAGTCCTCAGCTTACAAGAAGAGGGCCAAGATTATGGACTTCGGCTTCTGGTCAGCAAATGACTGAATATTCTAATCCTTCTCCATCTACCTCTGTTAGTGCTGAGGGTAAGACAGTGAGACAGCCCAATGTGATTTATTCATGGATTCAGAATAAACGTGAACAGATTAAGAATTTCTTATCAAAACGGGTGCTGATAATGTATTTTTTCAGTAAGCACCCAGAGGCCTCCATTCAGGCTGTTTTTTCAGATGCCCAAATGCATATTTGGGCATTAGAAGTTGACAAGTACTTCAAGCTTCCTCATGCTTCCAGTAAACCACCTCGGATTTCAGGAAGCCTAGTGGACACTTCTTATAAAACATTAAGATTTGCCTTTAGAGCATCACTAAAAACTGCCATCTATAGAATAACTACTACATTTGGTGAACATCTGAATGCTGTGCAAGCATCTGCAGAACATCAGAAAAGACTTCAACAGTTCTTGGAGTTCAAAGAATAG

Related Sequences

bmy_18827T0 Protein

Length: 672 aa      View alignments
>bmy_18827T0
MGPSGGLPPFELRWRVGSLYPAPFRVGAAITMVTAASRPCAGGPRDILWRVLGWRIVTSIVWSVLLLPICTTVFVIFSSIDLFHPIQWLSDSFSDLYSSYIIFYLLLLSVVIVIISIFNVEFYTVVPSIPCSRLALIGKIIHPQQLMHSFIHAAMGMMMAWCAAVITKGQYSFLVVPCSATESLDSPAAQTCLNEYHLFFLLAGAFMGCSYSLLYFINNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLLRNFCIVYYFLGHIPKAWISTAMDLQLDEQFHRPLDTVSGLLNLSLLYHVWLCGVFVLMTWYISWILFKIYATEAHLFPVQPPFSEESYECLPKVLNSNPPLIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHSWTAISRECLNLLNDMTQKLVLYQEAAATNGRVMSSSYPVEPKKLNSPEETTFHTPKSSQMPRPSMPSLIKTSLFSSKLSAPDVASPLATPFGSSVVNRMAGIFDVSTCYGSPQSPQLTRRGPRLWTSASGQQMTEYSNPSPSTSVSAEGKTVRQPNVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE*