Part of scaffold_1868 (Scaffold)

For more information consult the page for scaffold_1868 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LRRC42 ENSTTRG00000010175 (Bottlenosed dolphin)

Gene Details

leucine rich repeat containing 42

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009649, Bottlenosed dolphin)

Protein Percentage 99.26%
cDNA percentage 98.94%
Ka/Ks Ratio 0.12187 (Ka = 0.0035, Ks = 0.0286)

LRRC42 ENSBTAG00000019198 (Cow)

Gene Details

Leucine-rich repeat-containing protein 42

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000040839, Cow)

Protein Percentage 94.87%
cDNA percentage 95.19%
Ka/Ks Ratio 0.20554 (Ka = 0.0246, Ks = 0.1199)

LRRC42  (Minke Whale)

Gene Details

leucine rich repeat containing 42

External Links

Gene match (Identifier: BACU000247, Minke Whale)

Protein Percentage 95.5%
cDNA percentage 96.08%
Ka/Ks Ratio 0.38827 (Ka = 0.0299, Ks = 0.0771)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1359 bp    Location:284142..302580   Strand:+
>bmy_18831
ATGTCTTACTACCTCAACTCAGAAAACCACCTGGACCCAGGGCCCGTCTACGTGCGAGAAAATGGGCAACTGCACATGGTCAATCTGGCCTTGGATGGTGTCAGGAGTAGCCTGCAGAAGCCAAGGCCTTTCAGACTGTTTCCCAAAGGCTTTTCAGTGGAGCTTTGCATGAACAGGGAAGATGATACTGCACAGAAAGAGAAGACTGATCATTTCATCTTCACATACACCCGGGAGGGGAATCTTCGGTACTCTGCCAAATCCCTCTTCAGCCTCGTCCTGGGCTTCATCTCTGACAATGTTGATCACATTGATTCCCTTATTGGCTTTCCTGAGCAGATTGCTGAAAAGCTGTTCTCTGCTGCTGAAGCCAGACAGAAATTCACAGAGCCAGGTGCAGGGCTGAGGGCTTTACAGAAATTTACAGAGGCCTATGGAAGTCTGGTGCTTTGCTCCTTGTGTTTGCGAAACAGATATCTGGTGATTTCAGAAAAACTCGAGGAGATTAAGTCTTTCCGGGAGCTGACCTGCCTGGATCTATCCTGTTGCAAGCTTGGAGATGAGCATGAACTTCTAGAACATCTCACCAATGAGGCCCTGTCTAGTGTAACTCAACTCCACCTGAAGGATAATTGTTTATCTGATGCTGGGGTGCGGAAAATGACGGCACCAGTTCGAATCACAGATGCAGGGATTGGATACCTCTTTTCTTTTAGAAAACTAAACTGCTTAGATATCTCTGGGACGGGACTCAAGGACGTCAAAGCTGTCAAACACAAGCTTCAGACCCACATAGGTCTCGTTCACTCCAAAGTGCCTTTGAAGGAATTTGATCACAGTAACTGCAAGACAGAGGGCTGGGCTGACCAGGTAGATGTCCTGGATGAACCATTCAAGGAAGTTCGCTTAGTCCAACTCAATGAAGCCGATATCCTCCGAGTACTGGCAGAAACACTGGTGACACGTATTGAGGCCATATTTCCAGATCAGACCATGCTAATTGTTCTGCAGTGGGAGCGTGTGACTTCGGAAGCTGTGAAGCCACGAGAAACCTCGGAGCCTGGAACAGCAGCTCAGCATTTCTATGGGAAGCGGGCTCGAACAGAAGCCCCAGTGAAGTGTCTCCTGGCAGATGCCCACATGAACTCTTCTGAGAAACTCCAGTTCTATAAAGAGAAAGCCCCAGATTGCCATGGACCACTGTTGAAACACGAAGCCCTCTCAAGCCAGGAGTCAAAGAAGAGCAAGAAGAGAGCTTTTGAGGAGCCAGAGAAGGAACAGAGCAACTCTTCACAGTCTTCAAAGCAGAAATATATGTGTCTTGCTGTGGAAGACTGGGACTTGTTAAATTCCTATTGA

Related Sequences

bmy_18831T0 Protein

Length: 453 aa      View alignments
>bmy_18831T0
MSYYLNSENHLDPGPVYVRENGQLHMVNLALDGVRSSLQKPRPFRLFPKGFSVELCMNREDDTAQKEKTDHFIFTYTREGNLRYSAKSLFSLVLGFISDNVDHIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLRALQKFTEAYGSLVLCSLCLRNRYLVISEKLEEIKSFRELTCLDLSCCKLGDEHELLEHLTNEALSSVTQLHLKDNCLSDAGVRKMTAPVRITDAGIGYLFSFRKLNCLDISGTGLKDVKAVKHKLQTHIGLVHSKVPLKEFDHSNCKTEGWADQVDVLDEPFKEVRLVQLNEADILRVLAETLVTRIEAIFPDQTMLIVLQWERVTSEAVKPRETSEPGTAAQHFYGKRARTEAPVKCLLADAHMNSSEKLQFYKEKAPDCHGPLLKHEALSSQESKKSKKRAFEEPEKEQSNSSQSSKQKYMCLAVEDWDLLNSY*