Sequence details bmy_18894 (Coding sequence)

Part of scaffold_1881 (Scaffold)

For more information consult the page for scaffold_1881 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PPARGC1B ENSTTRG00000008430 (Bottlenosed dolphin)

Gene Details

peroxisome proliferator-activated receptor gamma, coactivator 1 beta

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007989, Bottlenosed dolphin)

Protein Percentage 96.36%
cDNA percentage 96.93%
Ka/Ks Ratio 0.2495 (Ka = 0.0184, Ks = 0.0739)

PPARGC1B ENSBTAG00000012943 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017197, Cow)

Protein Percentage 90.3%
cDNA percentage 90.43%
Ka/Ks Ratio 0.15325 (Ka = 0.049, Ks = 0.32)

PPARGC1B  (Minke Whale)

Gene Details

peroxisome proliferator-activated receptor gamma, coactivator 1 beta

External Links

Gene match (Identifier: BACU019451, Minke Whale)

Protein Percentage 98.29%
cDNA percentage 98.46%
Ka/Ks Ratio 0.21297 (Ka = 0.0076, Ks = 0.0359)

Additional orthologs identified in other species via the OPTIC pipeline.

PPARGC1B (Human)   Ppargc1b (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3012 bp    Location:160175..186304   Strand:+
Raw sequence 
>bmy_18894
ATGGAGCAGCAGGAAGGGGGATTTGGCGGGGGATCTGGGGAGGAGCAACTCTGCGCTGACTTTCCAGAGCTAGACCTCTCCCAGCTGGACGCCAGCGATTTTGACTCGGCCACCTGCTTTGAGGAGCTGCAGTGGCGCCCGGAGAACTCCGAGACCGAACCCAGCCAGTACAGCCCCGACGATCCRGAGCTCTTCCAGATAATCGACAGTGAGAATGAGGCCCTCCTGGCAGCACTCACCAAAACCCTGGATGACATCCCYGAAGATGTTGTGCATCTGGCCGCCTTCCCAGCCCTGGATGATGGAGACGCACCTTCCTGCGCTTCTGCTTCTCCTGTCCCCTCATCTGCGCCCCCCAGCCCCTCCCTGGAGAGGGCCCCAGCCTTGGCCCCTGAAGTGGATGAGCTCTCGCTGCTGCAGAAACTCCTTCTCGCCACGTCCTACCCAACCTCGACCTCTGACAGCCAGAAGGAAGGGAGCGCCTGGCGCCAGGCAGGTCTCAGGTCCAGAAGTCAGCGGCCTTGGGTCAAGATGGACAGCATCCAAGACAGGAAGGCCCACATGATGCAGTCTCAGACCCGGAGTTGCACAGAGCTGCATAAGCACCTCACCTCGGTGCCGTCCTGCCCCCGGGCTAAAGCCCGCTCCCCTGATAGGGTCCTCCAGCCACCACCACCCCTGAGTCCCTGGGTCCCTGCCAAGGAGGATGAGGAGGCGGGTGAGGACTGCCTGAGTCCCCAGCCGGCTCCAGCCTCTCCCTGGGACTCCCCAGCACCGGGCAGGGCAGACCCCGGCGCCCAGGTTTCCCAGGAGGACACGCAGGCCATGGTGCAGCTCATTCGCTACATGCACACCTACTGCCTTCCCCAGAGGAAGCTRCCCGCACAGGCCCCAGAGCCAGCCCCCCAGCCCTGCAGCAGCCCCGCCAAGCAGGTCAGACCCCGGCCTCGGTGCCAGCACCCTTCCAAAGCCACCTGGGCTGAGTTCTCCATCCTGAGGGAACTTCTGGCTCAAGATATCCTCTGTGATGTCAGCAAACCCTACCGCCTGGCCACGCCTGTCTACGCCTCCCTCACACCCCGGGCCCGGCCCAGGCCCAAAGACAGCCAGGCCTCTGCGGGCCACCCCTCCCCCGTGGAGGAGGTGCGGGTCGCGGCTTCACCCCAGAGCTCGGGGCCCAGACCCAGCCTGCGCCCGCTGCGGCTGGAGGTGAAAGGGCACATCGGCCGGCTGGCCAGGCTACAGCCTGAGGAGGAAGATGAGGAAGAGGAGGAAGAAGAAGAAGAAAAAGAGGAAGAGGAGGAGGAGGAGTGGGGCCGGAAAAGGCCGGGCCGGGGCCTGCCGGGGACCAAGCTGGGGAGGAAGCAGGAGAGCTCCGTGTGCCCCGTGCGGCGTTCCAGGAGACTGAACCCGGAGCTGGGCCCCTGGCTGACGTTCACCGATGAGCCGATGGTCCCCGCGGAGCCCCAAGGGGCTCTGCCCTCGCTGCGCCTGGCCCCTGAGGCCTACGACGTGGAGGGGGAGCTGGGCAGCCCCGCGGACGAGGACAGTGGCCAAGACCAGCAGCTCCGACGGGGACCCCAGATCCCAGCTCTGGAGAGCCCCTGTGAGAGCGGGTGTGGGGACACCGACGAGGACCCCAGTTGTCTGCAGCTCTCTTCTGGAGACTCTCCCAGGTGCCTCATGCTGGCCTTGTCGCAAAGCCCCACTGGCGACCCTCCTTTTGGCAAGAAGAGCTTCGAGCAGACCTTGACGGTGGAGCTCTGTGGCACGGCAGGACTCACTCCACCCACCACACCTCCGTACAAGCCCACAGAGGAAGACCCCTTCAAGCCAGACATCAAGCACAGCCCAGGCGAAGACATAGCTCCCACCCCGGAGGTTCCCCAGCTCGGGGCCACCGCAGAGGCTGCCCACAAGCTGCCAAAGAAGCACCCAGAGCGGAGCGAGCTCCTGTCCCACCTGCGGCATGCCACAGCCCAGCCAGCCTCCCAGGCTGGTCAGAAGCGCCCCTTCTCCTGTTCCTTTGGAGACCACGACTACTGCCAGGTGCTCAAGCCCGACGGCGCCCTGCAGAGGAAGGTGCTGAGGTCCTGGGAGCCATCTGGGGTCCACCTCGAGGACTGGCCCCAGCAAGGTGCCCCGCGGGCTGAGGCACAGGCCTCCGGCAGGGAGGAAGGCGGGAGCTGTGATGTCGGTGCCCCCACCAAGGACAGTACGCTGCTGAGAGACCACGAGATCCGCGCCAGCCTCACCAAGCACTTTGGCCTCCTGGAGACAGCCTTRGAGGATGAAGACCTGGCCTCCTGCAAGAGCCCCGAGTACGACACCGTCTTTGAGGACAGCAGCAGCAGCGGCGAGAGCAACTTCCTCCTAGAGGAGGACGACGAGGAGGACGACGAGGAAGAGGACTCAGGGGTCAGTCCCCCTCGCTCTGACCACTGCCCCTACCAGAGCCCACCAAGCAAGGCCAGTCGGCAGCTCTGCTCCCGCAGCCGCTCCAGCTCTGGCTCCTCGTCCTGCCGCTCCCGGTCACCAGCCACACGAAGGACCTTCAGATGTGAGAGCAGAGGGTCGTGTTCAGACAGAACGCCAAGTGTCCGGCACACCAGGAAGCGGCGGGAAAAGGCCATTGGTGAAGGCCGCGTGGTGTACRTTCGAAATCTCTCCAGTGACATGAGCTCCCGTGAACTGAAGAGGCGCTTCGAGGTGTTTGGCGAGATTGTGGAGTGCCAGGTGCTCACGAGAAGCAAGAGAGGCGAGAAGTACGGCTTCATCACCTACCGGTGTTCCGAGCACGCCGCCCTCTCTCTGAGGAACGGCGCTGCCCTGCGGAAACGCAGCGAGCCCTCCTTCCAGCTGAGCTACGGGGGGCTCCGGCACTTCTGCTGGCCCCGCTACACTGACTATGATTCTAATTCAGAAGAGGCCCTGCCTGCGTCAGTGAAAACCAAGTACGAAGCCATGGATTTTGACAGCTTACTGAAGGAGGCCCAGCAGAGCCTGCACTGA

Related Sequences

bmy_18894T0 Protein

Length: 1004 aa      View alignments
>bmy_18894T0
MEQQEGGFGGGSGEEQLCADFPELDLSQLDASDFDSATCFEELQWRPENSETEPSQYSPDDPELFQIIDSENEALLAALTKTLDDIPEDVVHLAAFPALDDGDAPSCASASPVPSSAPPSPSLERAPALAPEVDELSLLQKLLLATSYPTSTSDSQKEGSAWRQAGLRSRSQRPWVKMDSIQDRKAHMMQSQTRSCTELHKHLTSVPSCPRAKARSPDRVLQPPPPLSPWVPAKEDEEAGEDCLSPQPAPASPWDSPAPGRADPGAQVSQEDTQAMVQLIRYMHTYCLPQRKLPAQAPEPAPQPCSSPAKQVRPRPRCQHPSKATWAEFSILRELLAQDILCDVSKPYRLATPVYASLTPRARPRPKDSQASAGHPSPVEEVRVAASPQSSGPRPSLRPLRLEVKGHIGRLARLQPEEEDEEEEEEEEEKEEEEEEEWGRKRPGRGLPGTKLGRKQESSVCPVRRSRRLNPELGPWLTFTDEPMVPAEPQGALPSLRLAPEAYDVEGELGSPADEDSGQDQQLRRGPQIPALESPCESGCGDTDEDPSCLQLSSGDSPRCLMLALSQSPTGDPPFGKKSFEQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDIKHSPGEDIAPTPEVPQLGATAEAAHKLPKKHPERSELLSHLRHATAQPASQAGQKRPFSCSFGDHDYCQVLKPDGALQRKVLRSWEPSGVHLEDWPQQGAPRAEAQASGREEGGSCDVGAPTKDSTLLRDHEIRASLTKHFGLLETALEDEDLASCKSPEYDTVFEDSSSSGESNFLLEEDDEEDDEEEDSGVSPPRSDHCPYQSPPSKASRQLCSRSRSSSGSSSCRSRSPATRRTFRCESRGSCSDRTPSVRHTRKRREKAIGEGRVVYXRNLSSDMSSRELKRRFEVFGEIVECQVLTRSKRGEKYGFITYRCSEHAALSLRNGAALRKRSEPSFQLSYGGLRHFCWPRYTDYDSNSEEALPASVKTKYEAMDFDSLLKEAQQSLH*