Part of scaffold_1902 (Scaffold)

For more information consult the page for scaffold_1902 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RNF111 ENSTTRG00000005259 (Bottlenosed dolphin)

Gene Details

ring finger protein 111

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004958, Bottlenosed dolphin)

Protein Percentage 89.18%
cDNA percentage 90.66%
Ka/Ks Ratio 0.55339 (Ka = 0.0654, Ks = 0.1181)

RNF111 ENSBTAG00000014181 (Cow)

Gene Details

E3 ubiquitin-protein ligase Arkadia

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000018858, Cow)

Protein Percentage 90.72%
cDNA percentage 91.64%
Ka/Ks Ratio 0.31191 (Ka = 0.0579, Ks = 0.1857)

RNF111  (Minke Whale)

Gene Details

ring finger protein 111

External Links

Gene match (Identifier: BACU001018, Minke Whale)

Protein Percentage 78.56%
cDNA percentage 82.85%
Ka/Ks Ratio 0.90866 (Ka = 0.1951, Ks = 0.2147)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1749 bp    Location:215102..133123   Strand:-
>bmy_18948
ATGAAGGGACCTCTTCAACCAAAAAGAACAGACTGGGGAAAAGATAAGCTAAGGCCTTCCTTAAAGTTTCCCATGTCTCAATGGACTCCTGAATATAACAAGCTCTATACCTTAAAAGTGGATATGAAGAAAGCTTCCTCCACTCCCCAGATCACTGCCAATGAAGAAATTAATGTTACCTCAACTGACAGTGAAGTGGAGATAGTAACAGTTGGGGAAAGCTATCGGTCTCGTTCAACCCTTGGACACAATAGATCTCACTGGAGCCAAGGTTCAAGTTCTCATACAAGTCGGCCACAGGAACCACGGAACCGCAGTAGGATTTCTACTGTTATACAGCCCTTGAGGCAGAATGCAGCAGAGGTTGTGGACCTTACTGTTGATGAAGATGAACCTACTGTAGTACCAACCACTTCCACGAGAATGGAATCACAAACCACAAGCGCTTCCATTAACAATTCAAATCCATCTACCTCTGAGCAGCCCTCTGATACTGCTTCAGCTGTCACTAGTAGCCAACCCTCCGCAGTGTCAGAGACTTCACCTATGCTTGCAAGCAATAGTATGACTGGTACTTCTACAGGAGATGACTCAAGGAGAACTGCATCTAGTGCTATAACGGAAACTGGCCCTCCTGCGATGCCAAGGTTACCTTCCTGCTGTCCCCAGCACTCGCCATGTGGAGGGTCGTCGCAGRGTCACCATGCGTTAGGACATCCACACACAAGTTGCTTTCAGCAGCATGGCCACCATTTTCAGCATCATCACCACCACCATCATACTCCCCATCCAGCTGTCCCAGTGTCTCCCTCCTTTGGCGATCCCACTTGCCCTGTGGAAAGACCTCCACAAGTACAAGCACCTTGTGGAGCAAATAGTAGTTCTGGTACCAGCTACCATGACCAGCAGGCATTGCCAGTAGACCTGAGCAGCAGTGGTATCAGAAGTCATGGAAGTGGTGGTTTTCATGGAGCATCTGCCTTTGACCCCTGCTGTCCTGTTTCCTCTTCCCGAGCTGCAATCTTTGGCCACCAGGCTGCTGCTGCTGCCGCCCCGAGCCAGCCATTATCAGTAGATGGTTACGGATCCAGCGTGGTTGCACAGCCCCAGCCCCAGCCCCCTCCACAAGCCTCGCTGTCATCTTGCCGACATTACATGCCGCCTCCTTGTAAGCGGGCACATGAACGCCCCCCACCCCATCCACATAGGATGCACCCAAACTATGGTCATGGGCATCATATTCATGTGCCTCAGACTATGTCCTCACATCCTCGACAGGCTCCAGAGAGATCTGCCTGGGAACTGGGAATTGAAGCTGGAGTGACTGCAGCTACTTATACACCTGGAGCATTGCATCCTCACTTGGCCCATTACCATGCACCACCTCGACTTCATCACTTGCAATTAGGAGCTCTTCCTTTAATGGTTCCTGACATGGCAGGCTATCCTCACATTCGTTACATTTCATCAGGCTTGGATGGAACATCATTCAGAGGTCCTTTCAGGGGCAATTTTGAGGAACTTATTCATTTGGAAGAAAGACTAGGAAATGTCAATCGTGGAGCATCCCAGGGGACAATTGAAAGATGTACATATCCACATAAATACAAAAAAGAAGGAGAATTTGAGAGACGCCTTCCCTGTATGCACCTTTTCCACCAAGTGTGTGTTGACCAGTGGTTGATTACCAATAAGAAGTGCCCCATATGCAGAGTGGACATTGAGGCCCAGCTGCCAAGTGAAAGTTGA

Related Sequences

bmy_18948T0 Protein

Length: 583 aa      View alignments
>bmy_18948T0
MKGPLQPKRTDWGKDKLRPSLKFPMSQWTPEYNKLYTLKVDMKKASSTPQITANEEINVTSTDSEVEIVTVGESYRSRSTLGHNRSHWSQGSSSHTSRPQEPRNRSRISTVIQPLRQNAAEVVDLTVDEDEPTVVPTTSTRMESQTTSASINNSNPSTSEQPSDTASAVTSSQPSAVSETSPMLASNSMTGTSTGDDSRRTASSAITETGPPAMPRLPSCCPQHSPCGGSSQXHHALGHPHTSCFQQHGHHFQHHHHHHHTPHPAVPVSPSFGDPTCPVERPPQVQAPCGANSSSGTSYHDQQALPVDLSSSGIRSHGSGGFHGASAFDPCCPVSSSRAAIFGHQAAAAAAPSQPLSVDGYGSSVVAQPQPQPPPQASLSSCRHYMPPPCKRAHERPPPHPHRMHPNYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHHLQLGALPLMVPDMAGYPHIRYISSGLDGTSFRGPFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKEGEFERRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES*