Part of scaffold_1921 (Scaffold)

For more information consult the page for scaffold_1921 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TAF1A ENSTTRG00000016592 (Bottlenosed dolphin)

Gene Details

TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015729, Bottlenosed dolphin)

Protein Percentage 98.41%
cDNA percentage 98.34%
Ka/Ks Ratio 0.2204 (Ka = 0.0068, Ks = 0.0307)

TAF1A ENSBTAG00000013483 (Cow)

Gene Details

TATA box-binding protein-associated factor RNA polymerase I subunit A

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017928, Cow)

Protein Percentage 90.48%
cDNA percentage 93.12%
Ka/Ks Ratio 0.32553 (Ka = 0.047, Ks = 0.1445)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1458 bp    Location:192582..226884   Strand:+
>bmy_18983
ATGAGTGATTTCAGTGAAGAATTGGTAAGGCCCACAACAGAGGATGAACAGGGGGAACCGCGTGTGCCCTCTGGTACAGGAATGTGTCTTCCTTGGCTCCAAAAGCATATAGAAACCATAGCGACTGGAGGAAAACAGGAGAAGGATTTTGCTCAGACAACAAGTGCTTGTTTAAGTCTTATCCAAGAAGCTCTGCTGAAGCACCAGTGGCAGCGAGCTGCAGAATACATGCACAGTTACTTTCAGATCTTGGAAGATTCAGATAGCAACAAAAGACAGATTGCACCRGAGATTATTTGGAGGCTTGGAAGTGAAATTCTTTATTATCATCCCAAAAGCAATGTGGAGACTTTCAATACCTTTGCTGACCGGATGAAAAATATTGGTGTCATGAATTACTTGAAGATTATTTGGAGGCTTGGAAGTGAAATTCTTTATTATCATCCCAAAAGCAATGTGGAGACTTTCAATACCTTTGCTGACCGGATGAAAAATATTGGTGTCATGAATTACTTGAAGATCTCCTTACAACATGCATTATACCTTCTGCATCATGGTATGCTTGAGGATGCGAACAGAAATCTCAGCCAGGCAGAGACATGGCGATATGGTGAAAAGTCATCTTCTCAGGAAGTGTTAATCAACCTTATTCAGGCCTATAAAGGGCTTTTGCAGTATTATATTTGGTCTAAAAAGAAGATGGAATTGTCTCAGCTTGCGTCCCAGAATATGCTCAACCACAGCTGGAAGACATCTATAAACCTTTGTGCATTGATTCAAATTCCTGGMGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAGATGCTGGAATTCTATGGGGATCAAGATGGAGCCCGAGAGGTGCTTACCAATTACGCCTATGATGAAAAGTTCCCATCAAATCCAAATGCTCATATCTACTTATACAACTTTTTAAAGAGAGAGAAGGCACCMAGAGAGAAACTGATAAGTGTGCTTAAGATTTTGTATCAAATTGTACCATCTCATAAACTGATGTTAGAATTCCATAGATTACTGAGAAAGTCAGCTGTTGTGACCATTGCAGAAAACGAAGAACACCATAAACTGGGGTTGGAGGTATTATTTGGAGTCTTAGATTTTGCTGGATGCACTAAAAATATAACTGCTTGGAAATATTTGGCAAAATATCTCAGACAGACTTTAATGGGGAGTCATCTTGCCTGGGTTCAAGAAGAGTGGAACTCCAGGAAAAACTGGTGGCCAAGCTTTCACTTCAGCTACTTTYGGGCAAAAAGTGATTGGAAGGAAGATAAAGCTTTGGCTTGTGAGAAAGCTTTGGTAGCTGGATTATTGTTAGGAAAAGGTTGTAGATATTTTCGGAATATTTCAAAACAAGATCACCAAGTCTTAAAGAAGAAAATTAAGCAGATGAAGAAATCAGTGAAAAAATACAGCATTGTAAATCCAGGACTCTGA

Related Sequences

bmy_18983T0 Protein

Length: 486 aa      View alignments
>bmy_18983T0
MSDFSEELVRPTTEDEQGEPRVPSGTGMCLPWLQKHIETIATGGKQEKDFAQTTSACLSLIQEALLKHQWQRAAEYMHSYFQILEDSDSNKRQIAPEIIWRLGSEILYYHPKSNVETFNTFADRMKNIGVMNYLKIIWRLGSEILYYHPKSNVETFNTFADRMKNIGVMNYLKISLQHALYLLHHGMLEDANRNLSQAETWRYGEKSSSQEVLINLIQAYKGLLQYYIWSKKKMELSQLASQNMLNHSWKTSINLCALIQIPGVWDPFVKSYVEMLEFYGDQDGAREVLTNYAYDEKFPSNPNAHIYLYNFLKREKAPREKLISVLKILYQIVPSHKLMLEFHRLLRKSAVVTIAENEEHHKLGLEVLFGVLDFAGCTKNITAWKYLAKYLRQTLMGSHLAWVQEEWNSRKNWWPSFHFSYFXAKSDWKEDKALACEKALVAGLLLGKGCRYFRNISKQDHQVLKKKIKQMKKSVKKYSIVNPGL*