Sequence detailsbmy_19022 (Coding sequence)

Part of scaffold_1924 (SequenceType object (1))

For more information consult the page for scaffold_1924 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CACHD1ENSTTRG00000009607 (Bottlenosed dolphin)

Gene Details

cache domain containing 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009150, Bottlenosed dolphin)

Protein Percentage 97.77%
cDNA percentage 97.25%
Ka/Ks Ratio 0.23964 (Ka = 0.0165, Ks = 0.069)

CACHD1ENSBTAG00000016455 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000021878, Cow)

Protein Percentage 96.22%
cDNA percentage 93.31%
Ka/Ks Ratio 0.11346 (Ka = 0.0254, Ks = 0.2237)

CACHD1 (Minke Whale)

Gene Details

cache domain containing 1

External Links

Gene match (Identifier: BACU000194, Minke Whale)

Protein Percentage 97.87%
cDNA percentage 97.67%
Ka/Ks Ratio 0.32995 (Ka = 0.0164, Ks = 0.0497)

Additional orthologs identified in other species via the OPTIC pipeline.

CACHD1 (Human)   Cachd1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3093 bp    Location:189621..237318   Strand:+
Raw sequence 
>bmy_19022
ATGCCTGAGGCACAGTGCCTGCGTGCACCTGTGGATTTGTCGGTTATATGTCTTTTCCCCACTCCTCCAGTTCTTGCAGACAACCTGAAATCCAACCCTGGAATTAAGTGGCAGTATTTCAGTTCAGAAGAAGGAATTTTCACTGTTTTCCCAGCACACAAGTTCCGGTGTAAGGGCAGCTATGAGCATCGCAGTAGACCTATCTACGTCTCCACTGTCCGGCCGCAGTCAAAGCACATAGTAGTGATCCTGGACCACGGGGCTTCCGTCACAGACACCCAGCTTCAGATTGCCAAGGACGCTGCCCAGGTCATCCTCAGCGCCATCGATGAACACGATAAGATCTCCATGCTGACTGTGGCAGACACCGTCAGGACTTGCTCACTTGACCAGTGCTATAAGACATTCCTGTCTCCAGCCACCAGTGAGACAAAAAGGAAAATGTCCACCTTCGTCAGCAGCGTCAAGTCTTTGGACAGCCCTACCCAGCACGCGGTGGGATTTCAAAAGGCATTTCAGCTGATTCGAAGCACAAACAATAGCACCAAGTTCCAAGCAAATACAGACATGGTCATCATTTACCTGTCTGCTGGCATTACATCAAAGGACTCTTCAGAAGAAGATAAAAAGGCAACTCTCCGTGTCATCAGTGAAGAAAATAGCTTTCTAAACAACTCCGTAATGATTCTCACCTACGCCCTCATGAACGATGGGGTGACTGGTTTGAAAGAGCTGGCTTTTCTGAGAGATCTTGCTGAACAGAACTCAGGGAAGTATGGCGTGCTGGACCGGACAGCCTTGCCTGTGATTAAGGGCAGCATGATGGTGCTGAACCAGCTGAGTAACCTGGAGACCACAGTTGGCAGGTTCTATACCAACCTTCCCAACCGGATGATTGATGAAGCTGTCTTTAGCCTCCCCTTCTCTGATGAGATGGGAGATGGTTTGATAATGACTGTGAGTAAACCCTGTTATTTTGGAAACCTCCTTCTGGGAATTGTAGGAGTGGATGTGAACTTGGCTTACATCCTTGAAGATGTGACATATTACCAAGATTCTTTGGCTTCCTATACTTTTCTCATAGATGACAAAGGGTATACCCTTATGCACCCATCTCTTACCAGGCCATATTTACTATCGGAACCCCCCCTTCATACTGATATCATCCATTATGAAAATATCCCCAAATTTGAGTTGGTTCGGCAAAATATCCTAAGCCTCCCTCTGGGCAGCCAGATTATCGCAGTCCCTGTGAACTCAACCCTGTCCTGGCACATAAACAAGCTGAGAGAAACTGGAAAGGAGGCCTACAACGTGAGCTATGCCTGGAAGATGGTGCAAGACACTTCCTTCATTCTCTGTATTGTGGTGATACAACCGGAAATACCTGTCAAACAACTGAAGAACCTCAACACTGTCCCCAGCAGCAAGCTGCTGTACCATCGGCTGGACCTCCTGGGCCAGCCTAGCGCTTGCCTCCACTTCAAACAGCTGGCCACGCTAGAAAGTCCAACCGTCATGCTGTCTGCTGGCAGCTTTTCCTCCCCCTATGAGCACCTCAGCCAGCCGGAGACAAAGCGCATGGTGGAACACTACACAGCCTATCTCAGCGACAACACCCGCCTCATTGCTAACCCGGGGCTCAAATTCTCTGTCAGAAATGAAGTAATGGCTACCAGCCACGTCACAGATGAATGGATGACACAAATGGAAATGAGTAGCCTGAACACTTACATTGTCCGCCGTTACATAGCAACGCCCAATGGCGTCCTCAGAATTTATCCTGGTTCCCTCATGGACAAAGCATTTGATCCCACTAGGAGACAATGGTATCTCCACGCAGTAGCTAATCCAGGTTTGATTTCTTTGACCGGACCTTACTTAGACGTTGGAGGAGCTGGCTATGTAGTGACCATCAGTCATACAATTCATTCATCCAGTACACAGCTGTCTTCCGGGCATACTGTGGCTGTGATGGGCATTGACTTCACGCTTCGATACTTCTACAAGGTTCTGATGGACTTATTACCAGTTTGTAACCAAGATGGTGGCAACAAAATAAGGTGCTTCATAATGGAGGACAGGGGTTATCTGGTGGCACATCCAACCCTCATTGACCCCAAAGGACATGCACCCGTGGAACAGCAGCACATCACCCACAAGGAGCCCCTGGTAGCAAATGACATCCTGAACCACCCCAACTTTGTAAAGAAGAACCTGTGCAACAGCTTCAGTGACAGAACGGTCCAGAGGTTTTATAAATTCAACACGAGCCTAGTGGGGGATTTGACGAACCTTGTGCACGGCAGTCACTGTTCTAAATACAGACTGGCGAGGATCCCGGGAACCAATGCATTTGTCGGCATTGTCAACGAAACGTGTGACTCTCTTGCCTTCTGTGCTTGTAGCATGGTGGACCGGCTCTGTCTCAACTGTCACCGAATGGAACAAAATGAATGTGAATGTCCTTGTGAGTGCCCTCTAGAGGTCAATGAGTGCACTGGCAACCTCACCAATGCAGAGAACAGAAACCCAAGCTGTGAAGTACACCAGGAGCCAGTGACGTACACGGCTATTGACCCTGGCCTGCAGGATGCTCTTCACCAGTGTGTCAACAGCAGGTGCAGTCAGAGGATGGAGAACAGCGATGGCAAGACCCACCTGGACAAATCCTACTGTGCGCCCCAGAAAGAATGCTTCGGGGGGATCGTTGGAGCCAAAAGTCCCTATGTTGATGACATGGGAGCAATAGGTGATGAGGTTGTCACATTGAACATGATTAAAAGTGCCCCTGTGGGTCCAGTGGCTGGAGGCATCATGGGCTGCATCATGGTCTTGGTCCTGGCTGTGTACGCATACCGTCATCAGATTCATCGCCGGAGTCATCAGCATATGTCTCCTCTTGCTGCCCAAGAAATGTCAGTGCGTATGTCCAACCTGGAGAATGACAGAGATGAAAGGGATGATGACGGCCATGAAGACAGAGGCATCATCAGCAATACTCGATTTATAGCCGCGGTCATCGAACGGCACGCACACAGTCCAGAAAGGAGGCGTCGCTACTGGGGTCGCTCGGGAACAGAAAGCGATCAT

Related Sequences

bmy_19022T0 SequenceType object (3)

Length: 1031 aa      View alignments
>bmy_19022T0
MPEAQCLRAPVDLSVICLFPTPPVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKFRCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISMLTVADTVRTCSLDQCYKTFLSPATSETKRKMSTFVSSVKSLDSPTQHAVGFQKAFQLIRSTNNSTKFQANTDMVIIYLSAGITSKDSSEEDKKATLRVISEENSFLNNSVMILTYALMNDGVTGLKELAFLRDLAEQNSGKYGVLDRTALPVIKGSMMVLNQLSNLETTVGRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFGNLLLGIVGVDVNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQNILSLPLGSQIIAVPVNSTLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHFKQLATLESPTVMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLISLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFIMEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQRFYKFNTSLVGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETCDSLAFCACSMVDRLCLNCHRMEQNECECPCECPLEVNECTGNLTNAENRNPSCEVHQEPVTYTAIDPGLQDALHQCVNSRCSQRMENSDGKTHLDKSYCAPQKECFGGIVGAKSPYVDDMGAIGDEVVTLNMIKSAPVGPVAGGIMGCIMVLVLAVYAYRHQIHRRSHQHMSPLAAQEMSVRMSNLENDRDERDDDGHEDRGIISNTRFIAAVIERHAHSPERRRRYWGRSGTESDH