Part of scaffold_1943 (Scaffold)

For more information consult the page for scaffold_1943 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM58 ENSTTRG00000015439 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 58

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014633, Bottlenosed dolphin)

Protein Percentage 97.1%
cDNA percentage 98.0%
Ka/Ks Ratio 0.38946 (Ka = 0.0136, Ks = 0.035)

TRIM58 ENSBTAG00000007470 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000009824, Cow)

Protein Percentage 91.79%
cDNA percentage 92.06%
Ka/Ks Ratio 0.16717 (Ka = 0.0392, Ks = 0.2345)

TRIM58  (Minke Whale)

Gene Details

tripartite motif containing 58

External Links

Gene match (Identifier: BACU002953, Minke Whale)

Protein Percentage 98.65%
cDNA percentage 99.04%
Ka/Ks Ratio 0.38011 (Ka = 0.0054, Ks = 0.0143)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1560 bp    Location:50869..65699   Strand:+
>bmy_19045
ATGGCCTCGGGGGGGCCCGGGGAGCGGCTGTGCGAGGAGGCCAGGTGCCCAGTGTGCCTGGATTTCCTGCAGAAACCGGTCAGTGTGGACTGCGGCCACAGCTTCTGCCTCAGATGCATCTCCGAGTTCTGCGAGAAGTCCGACAGTGCACAGAGCGGCCTCTATGCCTGTCCGCAGTGCCGGGGTCCCTTCAGGCTGGAGAGCTTCCGCCCCAACAGGCAGCTGGCCAGCCTGGTGGACAGCGTGCGGCAGCTGGGGCTCGGCGCGGGGCCCTCGGGGGCGCGCCTGTGTGCGAGGCACGGCGAGGACCTGAGTCGCTTCTGTGAGGAAGACCAGGAGGCTCTGTGCTGGGTCTGTGACACCACCCCAGAGCACAGGAGCCACCGCACAACACCGCTGCAGGAGGCCGCCAGGTGCTACCAGGTAAAGCTCCAGATGGCCCAGGAACATGTGAGGAAAGAGATGGAGGAAGCCTTGACTCAGGAGGCCAATGTGGGAAAGAAAACTGTCATTTGGAAGGAGAAAGTGGAAACGCAGAGGCAACRCTTCAGGTTGGAGTTTGAAAAGTATCGTGGCTTACTRGCCCTGGAGGAGCAACTGCAGCTTAGAAGACTGGAGGAGGAGGAGCGAGCCACCCTGCAGAGACTGCGGGAGAGCAAGAACCGGCTGGTTCATCAGAGCAGGGCCTTGAAGGATCTGGCAGAGGAGCTGGAGGAGATGTGCCAGCGCCCAGCCCTGGGTCTGCTGGAGGGTGCGGGAGGAGCCTTGAGCCGGTAYGTTTACTTTCTGAATCAAAGAATGGGTTGGGAGAGGCTGGGGAGGTTGGTGGATAACCCTACTGAGAACTGTGGGTTCTGCGCTCTTCTCAGAAGTAAGAGTGTTACACGGCTGGATCCGGAGACCATCCCCATGGAGCTGAAGACAATGTGTCGCATCCCTGGGATGAGGGAAATGTTGAGAAAGTTCCAAGTTGACATAAAACTGGATCCCGCCACAGCACATCCTAGCCTCCTCTTGACTGCTGACCTGCGCAGTGTGCAGGATGGAGAACTATGGAGGGATGTCCCCAACAACCCTGAACGATTTGACACATGGCCTTGTATCCTGGGTTTGCAGAACTTCTCATCAGGGAGGCATTACTGGGAAGTCGTGGTGGGAGAAAGAGCAGAATGGGGGTTAGGTGTCTGTCAAGACACAGTGTCAAGAAAGGGGGAAACCACACCATCTCCTGAGAACGGGGTCTGGGCCATGTGGCTACTGAAAGGGAGTGAGTACATGGTCCTTGCCTCTCCATCAGTTCCTCTCCTCCACCTGGAACGGCCTCGCTGCATTGGGATTTTCTTGGACTATGAAGCAGGTGAAATCTCCTTTTACAACATCACAAATGGGTCTTATATTTACACGTTCAATCACCTTTTCTCTGGTTTTCTTCGACCTTATTTTTTCATTTGTGACACGACTCCTCTTATCTTACCACCTATGACAGAAGTGGAGTTAGAAAATTGGGCATCCAGGGGTCATTTTCACCCTGCTTCTAACATTACAGACGATCCTTCCTAA

Related Sequences

bmy_19045T0 Protein

Length: 520 aa      View alignments
>bmy_19045T0
MASGGPGERLCEEARCPVCLDFLQKPVSVDCGHSFCLRCISEFCEKSDSAQSGLYACPQCRGPFRLESFRPNRQLASLVDSVRQLGLGAGPSGARLCARHGEDLSRFCEEDQEALCWVCDTTPEHRSHRTTPLQEAARCYQVKLQMAQEHVRKEMEEALTQEANVGKKTVIWKEKVETQRQXFRLEFEKYRGLLALEEQLQLRRLEEEERATLQRLRESKNRLVHQSRALKDLAEELEEMCQRPALGLLEGAGGALSRYVYFLNQRMGWERLGRLVDNPTENCGFCALLRSKSVTRLDPETIPMELKTMCRIPGMREMLRKFQVDIKLDPATAHPSLLLTADLRSVQDGELWRDVPNNPERFDTWPCILGLQNFSSGRHYWEVVVGERAEWGLGVCQDTVSRKGETTPSPENGVWAMWLLKGSEYMVLASPSVPLLHLERPRCIGIFLDYEAGEISFYNITNGSYIYTFNHLFSGFLRPYFFICDTTPLILPPMTEVELENWASRGHFHPASNITDDPS*