Part of scaffold_1943 (SequenceType object (1))

For more information consult the page for scaffold_1943 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM58ENSTTRG00000015439 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 58

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014633, Bottlenosed dolphin)

Protein Percentage 97.1%
cDNA percentage 98.0%
Ka/Ks Ratio 0.38946 (Ka = 0.0136, Ks = 0.035)

TRIM58ENSBTAG00000007470 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000009824, Cow)

Protein Percentage 91.79%
cDNA percentage 92.06%
Ka/Ks Ratio 0.16717 (Ka = 0.0392, Ks = 0.2345)

TRIM58 (Minke Whale)

Gene Details

tripartite motif containing 58

External Links

Gene match (Identifier: BACU002953, Minke Whale)

Protein Percentage 98.65%
cDNA percentage 99.04%
Ka/Ks Ratio 0.38011 (Ka = 0.0054, Ks = 0.0143)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence SequenceType object (2)

Length: 1560 bp    Location:50869..65699   Strand:+
>bmy_19045
ATGGCCTCGGGGGGGCCCGGGGAGCGGCTGTGCGAGGAGGCCAGGTGCCCAGTGTGCCTGGATTTCCTGCAGAAACCGGTCAGTGTGGACTGCGGCCACAGCTTCTGCCTCAGATGCATCTCCGAGTTCTGCGAGAAGTCCGACAGTGCACAGAGCGGCCTCTATGCCTGTCCGCAGTGCCGGGGTCCCTTCAGGCTGGAGAGCTTCCGCCCCAACAGGCAGCTGGCCAGCCTGGTGGACAGCGTGCGGCAGCTGGGGCTCGGCGCGGGGCCCTCGGGGGCGCGCCTGTGTGCGAGGCACGGCGAGGACCTGAGTCGCTTCTGTGAGGAAGACCAGGAGGCTCTGTGCTGGGTCTGTGACACCACCCCAGAGCACAGGAGCCACCGCACAACACCGCTGCAGGAGGCCGCCAGGTGCTACCAGGTAAAGCTCCAGATGGCCCAGGAACATGTGAGGAAAGAGATGGAGGAAGCCTTGACTCAGGAGGCCAATGTGGGAAAGAAAACTGTCATTTGGAAGGAGAAAGTGGAAACGCAGAGGCAACRCTTCAGGTTGGAGTTTGAAAAGTATCGTGGCTTACTRGCCCTGGAGGAGCAACTGCAGCTTAGAAGACTGGAGGAGGAGGAGCGAGCCACCCTGCAGAGACTGCGGGAGAGCAAGAACCGGCTGGTTCATCAGAGCAGGGCCTTGAAGGATCTGGCAGAGGAGCTGGAGGAGATGTGCCAGCGCCCAGCCCTGGGTCTGCTGGAGGGTGCGGGAGGAGCCTTGAGCCGGTAYGTTTACTTTCTGAATCAAAGAATGGGTTGGGAGAGGCTGGGGAGGTTGGTGGATAACCCTACTGAGAACTGTGGGTTCTGCGCTCTTCTCAGAAGTAAGAGTGTTACACGGCTGGATCCGGAGACCATCCCCATGGAGCTGAAGACAATGTGTCGCATCCCTGGGATGAGGGAAATGTTGAGAAAGTTCCAAGTTGACATAAAACTGGATCCCGCCACAGCACATCCTAGCCTCCTCTTGACTGCTGACCTGCGCAGTGTGCAGGATGGAGAACTATGGAGGGATGTCCCCAACAACCCTGAACGATTTGACACATGGCCTTGTATCCTGGGTTTGCAGAACTTCTCATCAGGGAGGCATTACTGGGAAGTCGTGGTGGGAGAAAGAGCAGAATGGGGGTTAGGTGTCTGTCAAGACACAGTGTCAAGAAAGGGGGAAACCACACCATCTCCTGAGAACGGGGTCTGGGCCATGTGGCTACTGAAAGGGAGTGAGTACATGGTCCTTGCCTCTCCATCAGTTCCTCTCCTCCACCTGGAACGGCCTCGCTGCATTGGGATTTTCTTGGACTATGAAGCAGGTGAAATCTCCTTTTACAACATCACAAATGGGTCTTATATTTACACGTTCAATCACCTTTTCTCTGGTTTTCTTCGACCTTATTTTTTCATTTGTGACACGACTCCTCTTATCTTACCACCTATGACAGAAGTGGAGTTAGAAAATTGGGCATCCAGGGGTCATTTTCACCCTGCTTCTAACATTACAGACGATCCTTCCTAA

Related Sequences

bmy_19045T0 SequenceType object (3)

Length: 520 aa      View alignments
>bmy_19045T0
MASGGPGERLCEEARCPVCLDFLQKPVSVDCGHSFCLRCISEFCEKSDSAQSGLYACPQCRGPFRLESFRPNRQLASLVDSVRQLGLGAGPSGARLCARHGEDLSRFCEEDQEALCWVCDTTPEHRSHRTTPLQEAARCYQVKLQMAQEHVRKEMEEALTQEANVGKKTVIWKEKVETQRQXFRLEFEKYRGLLALEEQLQLRRLEEEERATLQRLRESKNRLVHQSRALKDLAEELEEMCQRPALGLLEGAGGALSRYVYFLNQRMGWERLGRLVDNPTENCGFCALLRSKSVTRLDPETIPMELKTMCRIPGMREMLRKFQVDIKLDPATAHPSLLLTADLRSVQDGELWRDVPNNPERFDTWPCILGLQNFSSGRHYWEVVVGERAEWGLGVCQDTVSRKGETTPSPENGVWAMWLLKGSEYMVLASPSVPLLHLERPRCIGIFLDYEAGEISFYNITNGSYIYTFNHLFSGFLRPYFFICDTTPLILPPMTEVELENWASRGHFHPASNITDDPS*