Part of scaffold_1952 (Scaffold)

For more information consult the page for scaffold_1952 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

APTX ENSTTRG00000007384 (Bottlenosed dolphin)

Gene Details

aprataxin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006988, Bottlenosed dolphin)

Protein Percentage 95.33%
cDNA percentage 97.02%
Ka/Ks Ratio 0.77808 (Ka = 0.0212, Ks = 0.0273)

APTX ENSBTAG00000013947 (Cow)

Gene Details

aprataxin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000042890, Cow)

Protein Percentage 92.22%
cDNA percentage 93.0%
Ka/Ks Ratio 0.26728 (Ka = 0.0447, Ks = 0.1674)

APTX  (Minke Whale)

Gene Details

aprataxin

External Links

Gene match (Identifier: BACU006647, Minke Whale)

Protein Percentage 98.73%
cDNA percentage 99.26%
Ka/Ks Ratio 1.50101 (Ka = 0.0083, Ks = 0.0055)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 957 bp    Location:167629..150380   Strand:-
>bmy_19064
ATGCTGAGAAAGCTCGTCCTCTTTGGGATAACTGCCAAGATCCAAACTTGGACCGTGGCCCAATACGGGTCCAAGTGGAGCTGGCACTTCCCGATCCGGGCATCGGGCGAGACCCTGTCAGCAGGTAATCACTGGTTGCTCTCCAGTCTGTCTCGCGACGTCATCCCACAGCGCCGGAAGTGGAGGAGTAACGTGAGCTTGTCAGCCTCCGCCGTCTCTAGAGTAATGATGCGGGTGTGCTGGTTGGTGAGACAGGACAATCGGCACCAGCGAATCAAACTTCCACATTTGGAAGCAGTCATGGTTGGGCGCAGCCCCGAGACCAAGATCACTGACAAGAAATGTTCTCGACAGCAAGTACAGTTGAAAGCAGAGTGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTCAATCCCACCAGCATTGACTCACTCATAATTGGGAAAGACCAAGAGGTGAAGCTGCAGCCTGGCCAGGTCCTCCACCTGGTGAATGAACTTTATCCATATATCATAGAGTTTGAGGAAGAGACAAAGAACCCTGGCCTGGAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCTGTAGAAAGGGATGCTGCCCAGGAAGCTGAGCCCAGTACAGGACTAGAACCTGGGAGCAACCCTAGCCAGTGCTCTGTGCCCCCAAAGAAGGAGAAAGATGCATCCACCAAAAAGGAATCATTGGGCCACTGGAGTCAAGGCTTGAAGATTTCAATGGAGGACCCCAAAATGCAGGCTCGTCACCACTGGCTGGTCTTACCATGGGCCTCCATTTCCAGTCTGAAGGCTGTGACCGGAGAACACCTTGAGCTCCTCAGACACATGCACACTGTGGGGGAAAAAGTGATTGCAGACTTTGCTGGGTCTAGCAAACTCCGCTTCCGATTGGGCTACCATGCCATTCCCAGCATGAGCTGTGATTGA

Related Sequences

bmy_19064T0 Protein

Length: 319 aa      View alignments
>bmy_19064T0
MLRKLVLFGITAKIQTWTVAQYGSKWSWHFPIRASGETLSAGNHWLLSSLSRDVIPQRRKWRSNVSLSASAVSRVMMRVCWLVRQDNRHQRIKLPHLEAVMVGRSPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSLIIGKDQEVKLQPGQVLHLVNELYPYIIEFEEETKNPGLETHRKRKRSGNSDSVERDAAQEAEPSTGLEPGSNPSQCSVPPKKEKDASTKKESLGHWSQGLKISMEDPKMQARHHWLVLPWASISSLKAVTGEHLELLRHMHTVGEKVIADFAGSSKLRFRLGYHAIPSMSCD*