Sequence detailsbmy_19176 (Coding sequence)

Part of scaffold_1972 (SequenceType object (1))

For more information consult the page for scaffold_1972 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HP1BP3ENSTTRG00000011286 (Bottlenosed dolphin)

Gene Details

heterochromatin protein 1, binding protein 3

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000010701, Bottlenosed dolphin)

Protein Percentage 86.61%
cDNA percentage 87.16%
Ka/Ks Ratio 0.50578 (Ka = 0.033, Ks = 0.0652)

HP1BP3ENSBTAG00000018656 (Cow)

Gene Details

Heterochromatin protein 1-binding protein 3

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000024825, Cow)

Protein Percentage 94.18%
cDNA percentage 93.7%
Ka/Ks Ratio 0.24757 (Ka = 0.0387, Ks = 0.1563)

HP1BP3 (Minke Whale)

Gene Details

heterochromatin protein 1, binding protein 3

External Links

Gene match (Identifier: BACU005744, Minke Whale)

Protein Percentage 94.4%
cDNA percentage 95.86%
Ka/Ks Ratio 0.84664 (Ka = 0.0416, Ks = 0.0491)

Additional orthologs identified in other species via the OPTIC pipeline.

HP1BP3 (Human)   Hp1bp3 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1842 bp    Location:356381..326225   Strand:-
Raw sequence 
>bmy_19176
ATGGCGACTGATACGTCTCAAGGTGAACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAGGTAGAAGATAACACCATGCCGATTCGTCGAGCTGTGAATTCTACGCGGGAAACTCCTCCCAAGAGCAAGCTCGCTGAAGGGGAGGAAGAAAAGCCAGAACCAGATGTAAGTTCAGAGGAATCTGTCTCTACTGTAGAAGAACAAGAGAATGAAACTCCACCTGCTACATCTAGTGAGACAGAGCAGCCAAAGGGGCAACCTGAGAATGAAGAGAAGGAAGAAAACAAGCCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACAATACCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCCTCCCCACGTCCCAAGATGGATGCAATCCTAACTGAGGCCATTAAGGCAAGTTTTTATTTCAAGCAGTTCATCTTAGATTTATTCTGTTTGTCTCTTGCGTATTTGAAAATGGCATACTCCTGTGCAGACATCAGAAATCTTGCTCTGCTTCCTAAAAGAGATTTAAATAGAAGAAAGCCATTGCTAAGTTCATGTTTTTATAATATTATCACATTTGATCAGGAGAAAACTTCAGCATGCTTCCAGAAGAGTGGTGCATCCGTGGTTGCTATTCGAAAATATATCATCCATAAGTACCCTTCTCTGGAGCTGGAGAGAAGGGGCTACCTCCTTAAACAAGCACTGAAAAGAGAATTAAATAGAGGTGTTATCAAACAGGTAAAAGGAAAAGGTGCTTCCGGGAGTTTTATTGTGGTCCAGAAATCAAGAAAAACACCTCAGAAGTCCAGAAACAGAAAGAACAGGAGCTCTGCAGTGGATCCAGAACCACAAGTAAAATTGGAGGATATCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAAATACGTGTCTCAGTATTACCCTAAACTTAGAGTGGACATCAGTCTGATGGTAAAAAAGAGGCTTTTGGAGTGCCCTGGCAAGTTGGAATTTGGTTCTGTATGGTTCATGGTTCTGTATGTACAGCTGAAGAAATCAGGGGAGAAACCCCTGCTTGGTGGAAGCCTGATGGAATATGCAATCTTGTCTGCGATTGCTGCCATGAATGAGCCGAAGACCTGCTCCACCACTGCTCTGAAGAAGTATGTCCTGGAGAACCACCCAGGGACCAATTCTAACTATCAAATGCATTTGCTGAAGAAAACCCTACAGAGATGCGAAAAGAATGGGTGGATGGAACAGATCTCTGGTAAAGGATTCAGTGGCACCTTCCAGCTCTGTTTTCCCTATTACCCCAGCCCAGGAGTTCTGTTTCCAAAGAAAGAGCCAGATGATTCTAAAGATGAGGATGAAGATGAAGATGAGTCATCAGAGGAGGACTCTGAGGATGAAGAGCCACCACCTAAGAGAAGGTTGCAGAAGAAAACCCCAGCCAAGTCGCCAGGGAAGGCTGCATCCATGAAGCAGAGAGGGTCCAAGCCTGCACCTAAAGTCCCAGCTGCCCAGCGAGGGAAAGCTAGGCCCCTGCCCAAGAAAGCCCCTCCTAAGGCCAAAACTCCTGCCAAGAAAGCCAGACCCTCACCCCCAGTCATCAAAAAACCTAGTGGTAGCTCTTCAAAGAAGCCTGCAGCCAGTGTGAGAAAGGAAGTGAAATTGCCTGGCAAGGGCAAATCCACCATGAAGAAATCTTTCAAAGCAAAAAAGTAA

Related Sequences

bmy_19176T0 SequenceType object (3)

Length: 614 aa      View alignments
>bmy_19176T0
MATDTSQGELVHPKALPLIVGAQLIHADKLGEKVEDNTMPIRRAVNSTRETPPKSKLAEGEEEKPEPDVSSEESVSTVEEQENETPPATSSETEQPKGQPENEEKEENKPSEETKKDEKDQSKEKEKKVKKTIPSWATLSASQLARAQKQTPMASSPRPKMDAILTEAIKASFYFKQFILDLFCLSLAYLKMAYSCADIRNLALLPKRDLNRRKPLLSSCFYNIITFDQEKTSACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGKGASGSFIVVQKSRKTPQKSRNRKNRSSAVDPEPQVKLEDILPLAFTRLCEPKEASYSLIRKYVSQYYPKLRVDISLMVKKRLLECPGKLEFGSVWFMVLYVQLKKSGEKPLLGGSLMEYAILSAIAAMNEPKTCSTTALKKYVLENHPGTNSNYQMHLLKKTLQRCEKNGWMEQISGKGFSGTFQLCFPYYPSPGVLFPKKEPDDSKDEDEDEDESSEEDSEDEEPPPKRRLQKKTPAKSPGKAASMKQRGSKPAPKVPAAQRGKARPLPKKAPPKAKTPAKKARPSPPVIKKPSGSSSKKPAASVRKEVKLPGKGKSTMKKSFKAKK*