Part of scaffold_1995 (Scaffold)

For more information consult the page for scaffold_1995 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HPS4 ENSTTRG00000009397 (Bottlenosed dolphin)

Gene Details

Hermansky-Pudlak syndrome 4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008908, Bottlenosed dolphin)

Protein Percentage 91.27%
cDNA percentage 93.66%
Ka/Ks Ratio 0.46046 (Ka = 0.0353, Ks = 0.0766)

BT.65365 ENSBTAG00000017038 (Cow)

Gene Details

Hermansky-Pudlak syndrome 4 protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000050301, Cow)

Protein Percentage 74.52%
cDNA percentage 83.21%
Ka/Ks Ratio 0.416 (Ka = 0.1533, Ks = 0.3685)

HPS4  (Minke Whale)

Gene Details

Hermansky-Pudlak syndrome 4

External Links

Gene match (Identifier: BACU008830, Minke Whale)

Protein Percentage 95.9%
cDNA percentage 96.85%
Ka/Ks Ratio 0.46685 (Ka = 0.0255, Ks = 0.0546)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2127 bp    Location:38531..61814   Strand:+
>bmy_19212
ATGGAAGGAAACACGGCTCCCTTCTGTTCTCTTGACAGGTGGAATTATTTTTTCCTTTATGATGGTTCCAAGGTGAAGGGAGAAGGAGATCCAACCAGAGCTGGCATCTGTTACTTTTTTCCCCCTCAGACCCTGCTTGACCAACAGGAGCTGCTCTGTGGACAGATCGCCGGGGTTGTCCACTGCATTTCTGACATTTCCGGCTCTCCTCCCACCGTCGTCCGTCTGCGGAAACTTAAGTTTGCCATAAAGGTTGACGGCGATTACCTTTGGGTGCTGGGCTGTGCTGTTGAGCTCCCTGATGTCAGCTGCAAGCAGCTTCTGGATCAGCTCATCGGCTTCTTTAATTTTTACAACGGGCCTGTTTCTCTGGCCTACAAGAGCTGCTCTCGGGAAGAGCTGAGCGGGGAGTGGGACACCTTCATCGACCAGATCCTGAGAAACACTGGTGACCTGCATAGGATATTCAACTCCCTCTGGAACCTGGACCGAACGAAAGTGGAGCCCCTGTTGTTGCTGAAGGCGGCCCTCATTCTGCAGACCTGCCAGCGCTCGCCCCACGTGCTAGCCGGCTGCATCCTCTACAAGGGACTGATCGTTAGCACCCAGCTCCCACCCTCTGTCACAGCCAAGGTCCTGCTTCATCGAGCTGCACGTCGGGACCAGAGAAAACCTATAGGAGGGGATGCCCTGCAGGAACATGGAGCAGCACTCCCTCCAGATGTCCAGATTGTGCCTGTTTTCCTGACCGAAGAGGAAGCCGTCAGTCTCCGTGAGTTCCCCCGGGAGCCCACGACCAGCACTCTGGCATCTCCAGCCAGACTCCCGGAGCCCCCAGCCCAGCGCCCTCCAAAGGGTTTGAACACATCTGCCCCGAAAGAAAACGCCCCCAGACACGTGGGATCCACGGCTCGGATCTCAGCGACCACCCCTGAGCCCAGGTCTCCTGACGTCACCTGGCCAAATGGCAGCGGGGAGAACGGACACTGGTCTGGCTGTGATCTGAAGAGCATCAAGCCCCCAACACCGCACCACACCACCAGGGGCCAGGGGCCTGGGCTCGGCCTCTCCCTGGTGAAGGAAACCGGTTTGTCCAGGGGGGAAGAGGAACTGGACTTGTCTGAAATCCACGTTCCAGAAGCTCAGGACACGGGAGCATCCTTGGGTTATTCTGCCTCCGATGGCGGGCCTCCTGGCTGCAGGGCATCTGTCAGTGACTCTGGCAACCCCGGAAGCAAGCCACCCGAGGCCCTGCCTGTAGGCACAGCCGTGGGCGGCCCCCTCCCTCCCTCCACTCCTGGGATGCTCACCCAGAACGGAGCCCTAGAACGGCCCAGAGACCTTCCCGGCAACAGCAGCCAAGCCCCCGTCCCCAGGGACCACCTCCTCAGCCCGGCGAGCGGGCCGTTACCGTCGCCTTGCTTGGATTCGAGGCAGACGGGGACTGAGCTGCCCGTGGGGGAACAAGGCGAGGGGCAGCGTGGCGATGGGGTTCCTGAGGGCCACTCGGCCTCGGGCCCGGAACGCACCTCGGGCTCGGCAGACCCTCCAGGCGACGGCCCCTCCGCAGACAGAACCGGGTCCAGGGCGACCCCCGCGTCCCGCACGCGGCTCGTGCGGATGAACCTCTACACTCACAGCGTCAGAGGCCTGGTGCTGTTGCTGCTGGCCGAGGAGCCGCTGCTGGGAGATGGCACGGCCGTCGAGGACGTGTACCACGGCAGCCTGGCGTCCCTCAACGGGCTGGAGGTGCACCTGAACGAGACGCTGCCCCGGGACCAGGCGGCCCCCGCGGCCAGAGCCTATGGCTTCGCGCACTACGACCGCGTCCAGAACGTGCTGGCGGCCAACCTGCCGCAGGTGGCCACAGCCCAGGACCGCCGCTTCCTCCAGGCCGTCAGCCTGATGCATTCCGACTTCGCCCGGCTGCCCGCGCTGTACGAAGTGACCGTCAGGAATGCCTCCACGGCTGTGTACGCCTGCTGCAGCCCCGTCCAGGAAACCTATTTCCAGCAGCTGGCGTCGGCGGGGCGGAGCTCCGGCTTCCCGAGTCCGCAGGACAGCGCCTTCAGCCTCCCGGGCAAAGCCAAGCAGAAGCTGCTGAAGCATGGGGTGAACTTACTTTGA

Related Sequences

bmy_19212T0 Protein

Length: 709 aa      View alignments
>bmy_19212T0
MEGNTAPFCSLDRWNYFFLYDGSKVKGEGDPTRAGICYFFPPQTLLDQQELLCGQIAGVVHCISDISGSPPTVVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKQLLDQLIGFFNFYNGPVSLAYKSCSREELSGEWDTFIDQILRNTGDLHRIFNSLWNLDRTKVEPLLLLKAALILQTCQRSPHVLAGCILYKGLIVSTQLPPSVTAKVLLHRAARRDQRKPIGGDALQEHGAALPPDVQIVPVFLTEEEAVSLREFPREPTTSTLASPARLPEPPAQRPPKGLNTSAPKENAPRHVGSTARISATTPEPRSPDVTWPNGSGENGHWSGCDLKSIKPPTPHHTTRGQGPGLGLSLVKETGLSRGEEELDLSEIHVPEAQDTGASLGYSASDGGPPGCRASVSDSGNPGSKPPEALPVGTAVGGPLPPSTPGMLTQNGALERPRDLPGNSSQAPVPRDHLLSPASGPLPSPCLDSRQTGTELPVGEQGEGQRGDGVPEGHSASGPERTSGSADPPGDGPSADRTGSRATPASRTRLVRMNLYTHSVRGLVLLLLAEEPLLGDGTAVEDVYHGSLASLNGLEVHLNETLPRDQAAPAARAYGFAHYDRVQNVLAANLPQVATAQDRRFLQAVSLMHSDFARLPALYEVTVRNASTAVYACCSPVQETYFQQLASAGRSSGFPSPQDSAFSLPGKAKQKLLKHGVNLL*