Sequence details bmy_19256 (Coding sequence)

Part of scaffold_1993 (Scaffold)

For more information consult the page for scaffold_1993 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CAPN6  (Minke Whale)

Gene Details

calpain 6

External Links

Gene match (Identifier: BACU009993, Minke Whale)

Protein Percentage 97.44%
cDNA percentage 97.38%
Ka/Ks Ratio 0.32413 (Ka = 0.0167, Ks = 0.0515)

Additional orthologs identified in other species via the OPTIC pipeline.

CAPN6 (Cow)   CAPN6 (Human)   Capn6 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1926 bp    Location:209673..192575   Strand:-
Raw sequence 
>bmy_19256
ATGGGTCCTCCTCTGAAGCTCTTCAAAAACCAGAAGTACCAGGAACTGAAGCAGGAATGCATCAGGGATGGTAGACTTTTCTGTGATCCAACCTTTTTGCCTGAGAATGATTCACTTTTCTACAACCGACTGCTTCCTGGGAAGGTGGTGTGGAAACGTCCCCAGGACATCTGCGATGACCCCCGTCTGATTGTGGGCCATATCAGCAACCACCAGCTGACCCAAGGGAGACTGGGGCACAAGCCAATGGTCTCTGCGTTTTCCTGTTTGGCTGTTCAGGAGTCTCACTGGACAAAGACAATTCCCAACCATAAGGAACAGGAATGGGACCCTCGAAAACTAGATAAATATGCTGGGATATTTCGCTTCCGTTTCTGGCATTTTGGAGAATGGACCGAGGTGGTGATTGATGACTTGCTGCCCACCATCAATGGAGATCTCGTTTTCTCCTTCTCCACCTCCATGAATGAGTTTTGGAATGCTCTGTTGGAAAAAGCTTATGCCAAGTTGCTTGGCTGTTATGAAGCCCTCGATGGTCTGACCACTACTGATATCATCGTGGACTTCACTGGCACATTGGCTGAAACTGTTGACATGCAGAAGGGAAGATACACTGAGCTCGTTGAGGAGAAGTACAAGCTGTTTGGAGAACTGTACAAAACATTTACCAAAGGAGGTCTGATCTGTTGCTCCATTGAGTTTCCCAATCAGGAGGAACAAGAAGTTGAAACTGATTGGGGTCTACTGAAGGGCCATACGTACACCATGACTGATATTCGCAAGATTCGTCTTGGAGAAAGACTCGTGGAGGTCTTCAGTACTGAGAAGCTGTACATGATTCGTCTGAGGAACCCCTTGGGAAGACAAGAATGGAGTGGGCCCTGGAGTGAGATCTCTGAAGAGTGGCAGCAACTGACTGCAGCAGATCGCAAGAACCTGGGGCTTGTTATGTCTGATGATGGAGAGTTTTGGATGAGCCTGGAGGACTTTTGCCGCAACTTCCATGAACTGAATGTCTGCCGCAATGTGAACAACCCTATTTTTGGCCGCAAGGAGCTGGAATCGGTGGTGGGATGCTGGACTGTGGATGATGATCCCCTGATGAACCGTTCAGGAGGCTGCTATAACAACCGTGATACCTTCCTGCAGAATCCCCAGTACATCTTCACTGTGCCCGAGGATGGGCACAAGGTCATCATGTCTCTGCAGCAAAAGGACCTGCGCACTTACCGCCGCATGGGAAGACCCGACAATTACATCATCGGCTTTGAGCTCTTCAAGGTGGAGATGAACCGCAAATTCCGCCTCCACCACCTGTACATCCAGGAGCGCGCGGGGACCTCCACTTATATTGACACGCGCACCGTGTTTCTGAGCAAGTACCTGAAGAAGGGCAACTACGTGCTTGTCCCAACTATGTTCCAGCACGGCCGCACCAGCGAGTTTCTCTTGAGAATCTTCTCTGAAGTGCCTGTCCAGCTCAGGGAGCTGACTCTGGACATGCCCAAGATGTCCTGCTGGAATCTGGCTCGTGGCTACCCCAAGGTTGTCACCCAGATCACAGTGCATAGTGCCGAGGGCCTGGAGAAGAAGTATGCCAATGAAACTGTAAACCCATATTTGGTCATCAAGTGTGGAAAGGAGGAAGTCCGTTCTCCTGTCCAAAAGAATACTGTTCATGCCATTTTTGACACCCAGGCCATTTTCTACAGAAGGACCACTGACATTCCTATTATAGTGCAGGTCTGGAACAGACGAAAGTTCTGTGATCAGTTCTTGGGGCAGGTTACTCTGGATGCTGACCCCAGTGACTGCCGTGATCTGAAGTCCCTGTACCTGCGTAAGAAGGGTGGCCCAACTGCCAAAGTTAAACAAGGCCACATCAGCTTCAAGGTTATTTCCAGTGATGATCTCACTGAGCTCTAA

Related Sequences

bmy_19256T0 Protein

Length: 642 aa      
>bmy_19256T0
MGPPLKLFKNQKYQELKQECIRDGRLFCDPTFLPENDSLFYNRLLPGKVVWKRPQDICDDPRLIVGHISNHQLTQGRLGHKPMVSAFSCLAVQESHWTKTIPNHKEQEWDPRKLDKYAGIFRFRFWHFGEWTEVVIDDLLPTINGDLVFSFSTSMNEFWNALLEKAYAKLLGCYEALDGLTTTDIIVDFTGTLAETVDMQKGRYTELVEEKYKLFGELYKTFTKGGLICCSIEFPNQEEQEVETDWGLLKGHTYTMTDIRKIRLGERLVEVFSTEKLYMIRLRNPLGRQEWSGPWSEISEEWQQLTAADRKNLGLVMSDDGEFWMSLEDFCRNFHELNVCRNVNNPIFGRKELESVVGCWTVDDDPLMNRSGGCYNNRDTFLQNPQYIFTVPEDGHKVIMSLQQKDLRTYRRMGRPDNYIIGFELFKVEMNRKFRLHHLYIQERAGTSTYIDTRTVFLSKYLKKGNYVLVPTMFQHGRTSEFLLRIFSEVPVQLRELTLDMPKMSCWNLARGYPKVVTQITVHSAEGLEKKYANETVNPYLVIKCGKEEVRSPVQKNTVHAIFDTQAIFYRRTTDIPIIVQVWNRRKFCDQFLGQVTLDADPSDCRDLKSLYLRKKGGPTAKVKQGHISFKVISSDDLTEL*