Sequence details bmy_19269 (Coding sequence)

Part of scaffold_2012 (Scaffold)

For more information consult the page for scaffold_2012 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NXF1 ENSTTRG00000002482 (Bottlenosed dolphin)

Gene Details

nuclear RNA export factor 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002326, Bottlenosed dolphin)

Protein Percentage 84.3%
cDNA percentage 85.76%
Ka/Ks Ratio 0.36457 (Ka = 0.0469, Ks = 0.1286)

NXF1 ENSBTAG00000009488 (Cow)

Gene Details

Nuclear RNA export factor 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000012486, Cow)

Protein Percentage 92.26%
cDNA percentage 91.13%
Ka/Ks Ratio 0.16608 (Ka = 0.0446, Ks = 0.2683)

NXF1  (Minke Whale)

Gene Details

nuclear RNA export factor 1

External Links

Gene match (Identifier: BACU005360, Minke Whale)

Protein Percentage 90.62%
cDNA percentage 92.56%
Ka/Ks Ratio 0.48088 (Ka = 0.0637, Ks = 0.1324)

Additional orthologs identified in other species via the OPTIC pipeline.

NXF1 (Human)   Nxf1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 2850 bp    Location:8657..23249   Strand:+
Raw sequence 
>bmy_19269
ATGGCGGACGAGGGGAAGTCGTACAACGAGCACGATGATCGAGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGCCCTTTCCGGTGGAAGTATGGTGAGGGGAACCGGAGGTCTGGAAGAGGCGGTCCTGTCGTTCGGTGTTCCCGCCTGGAGGAAGATGACAGAGATGTGGCGATGAGTGATGCCCAGGATGTTCCCCGAGTACGATACAACCCCTATGCTGCACGACCCAACCGTCGGGGTGAGAGTTGGCACGAGCGGTCTCGAATTCATGTTACTGTGCCTCTGCGGAGAGATCGAGCTCCTCCAGAGAGGGGAGGGGCTGGCACCAGCCAGGATGGGACCTCAAAGAACTGGTTTAAGATTACAATTCCTTATGGCAGGAAATACGACAAGTCATGGCTCCTGAGCGTGATTCAGAGCAAGTGCAGTGTCCCTTTCACTCCCATTGAGTTTCACTATGAAAACACACGGGCCCAGTTTTTTGTTGAGGATGCCAGTACTGCCTCTGCATTGAAGGCTGTCAACTATAAGATTTTGGATCGGGAGAACCGCAGGGTGTGTGTGAAGGGCCTGGCTTGGTTGGGGGTGGGGATTGGTGCTCAGGGCATGGACTGGGTCTTGGTCCTGGGGCTTAGGCCTCCCTGGAGTTCACCGTGCCCATGCGTGTCTCCCCTGCAGATATCTATCATCATCAACTCCTCTCCTCCACCCCATACTGTGCAGAATGAACTGAAGCCAGAACAAGTAGAGCAGCTAAAGCTGATCATGAGCAAACGATACGATGGCTCCCAACAAGCACTTGACCTCAAGGGCCTCCGTTCAGACCCAGATTTGGTGGCCCAGAACATTGACGTTGTCCTGAATCGTAGAAGCTGTATGGCAGCCACCCTGCGAATCATTGAAGAGAACATCCCTGAGCTGTTGTCCTTAAACTTGAGCAATAACAAGCTGTACAGGCTGGATGACTTGTCCAGCATTGTGCAGAAAGCACCCAATCTAAAGATCCTCAATCTTTCTGGAAATGAGCTAAAGTCTGAGCGGGAGTTGGACAAGATAAAAGGGCTGAAGCTAGAAGAGCTGTGGCTTGAAGGAAACACCCTGTGTGATACCTTTCGAGACCAGTCCACCTACATCAGCGCCGTTCGAGAGCGATTTCCCAAATTATTACGCCTGGACAGCCATGAGTTACCCCCACCGATTGCCTTTGACGTTGAAGCCCCTACAGTGTTACCGCCCTGCAAGGGAAGCTACTTTGGAACAGAGACCCTGAAGAATCTGGTCCTGCACTTCTTGCAGCAGTACTATGCGATATATGACTCCGGAGACCGGCAGCGGCTCCTGGATGCCTACCACGATGGGGCCTGCTGCTCCCTGAGTATTCCTTTCACCCCCCAGAACCCTGCCCGAAGCAACTTAGCTGAGTACTTCAAGGATAGTAGGAATGTGAAGAAGCTTAAAGACCCTACCCTGCGGTTCCGGCTGCTGAAGCACACACGTCTCAACGTTGTGGCCTTCCTCAATGAGTTGCCCAAAACTCAGCATGACGTCAATTCCTTCGTGGTAGACATAAGCGCCCAGACAAAGTGTGGAATTGGGGAAGGGGCAGTGAAGAGGCAGGGAGGACTCAGGCTCCGGCTGGGAGCCGACGGGGTACCTGATGCTGCTGCTTCTCTTTCAGAGCACGTTGCTGTGTTTTTCTGTCAATGGAGTCTTCAAAGAAGGTGGGGATCTTTGGAGTCCCGAGTTGTCACCATTGGTATCATTGCAGTGGATGGAAAATCTCGGGACTCTTTGCGAGCCTTTACCCGGACGTTCGTCGCTGTTCCTGCCAGCAATTCAGGGTTGTGCATCGTAAACGATGAGCTGTTTGTGCGGAATGCCGGCCCCGATGAGACCCGGAGGGCCTTTGCCATGCCTGCACCCACGCCGTCTTCCAGCCCAGTGCCCACCCTCTCCCCGGAGCAGCAGGAGATGCTGCAGGCATTCTCCACCCAGTCTGGCATGAACCTTGAGTGGTCCCAGAAGTGCCTTCAGGACAACAACTGGGACTACACCAGATCTGCCCAGGCCTTTACTCATCTCAAGCCTTGCCCTTCGCAAGCGCGGGCGGGGGCGGGGGCGGGGCCGGGGCTCGGCTCGCCTCGCCTCGCCTGGGGCGGACAGATGGACTCCGAGGGGGGCGGGGCGGGGCCAGCGGCAGGAAGTCCCGCCCCGGAAGCGGCGCCGCTCAGGGCCATGGCGGCTCCCGGGCGGCGGTGGGCTGTGCGGCTGTTCTCAGCGCTGCAGTCCCTGCCCGCGCGCCGGGCCCTGCATGACGCGGCCCCGCCACGGGACGTGCTGCTCTTCGAGTACGAACGGGGTCGCTTCTTCGCCGTCCTCGGGCTGTTCTGCGCTGGCCAGGGCGTCTTCTGGGCTTCCTTAGCCATTGCCGCCTTGGCCCGACCCCCGGCCCCCACTCGGCCTCCAGACGCCGAGTCCCCAGGCCGCGGCCGCCTGGACCTGCGCTCCGCGCTCTGGCGCTACGGCCTTGCCGTCGGCTGCGGCGCCATCGGTACTCTGGTACTTGGTGCTGGTCTTCTCTTTTCCCTCCGCTCTGTGCGCTCAGTGATGCTACAGGCTGGAGGGAAGCAAGTAACCCTCACCACTCATGCCCCCTTTGGCTGGGGTGCCCATTTTACAGTTCCCTTGAACCAAGTATCCTGCATGGCCCACCGGGGTGAAGTCCCTGCCATGTTGCCTCTGAAGGTCAAAGGCCGACGATTCTACTTCCTCTTGGACAAAGCTGGACATTTCCCCAACACGAAACTCTTTGACAACACTGTGGGTGCCTACCGTAGCTTGTGA

Related Sequences

bmy_19269T0 Protein

Length: 950 aa      View alignments
>bmy_19269T0
MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKYGEGNRRSGRGGPVVRCSRLEEDDRDVAMSDAQDVPRVRYNPYAARPNRRGESWHERSRIHVTVPLRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLSVIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRVCVKGLAWLGVGIGAQGMDWVLVLGLRPPWSSPCPCVSPLQISIIINSSPPPHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNKLYRLDDLSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLEGNTLCDTFRDQSTYISAVRERFPKLLRLDSHELPPPIAFDVEAPTVLPPCKGSYFGTETLKNLVLHFLQQYYAIYDSGDRQRLLDAYHDGACCSLSIPFTPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTKCGIGEGAVKRQGGLRLRLGADGVPDAAASLSEHVAVFFCQWSLQRRWGSLESRVVTIGIIAVDGKSRDSLRAFTRTFVAVPASNSGLCIVNDELFVRNAGPDETRRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKPCPSQARAGAGAGPGLGSPRLAWGGQMDSEGGGAGPAAGSPAPEAAPLRAMAAPGRRWAVRLFSALQSLPARRALHDAAPPRDVLLFEYERGRFFAVLGLFCAGQGVFWASLAIAALARPPAPTRPPDAESPGRGRLDLRSALWRYGLAVGCGAIGTLVLGAGLLFSLRSVRSVMLQAGGKQVTLTTHAPFGWGAHFTVPLNQVSCMAHRGEVPAMLPLKVKGRRFYFLLDKAGHFPNTKLFDNTVGAYRSL*